SOFL6_ARATH
ID SOFL6_ARATH Reviewed; 177 AA.
AC B6IDH8; G1JSH9; Q9C651;
DT 17-JUN-2020, integrated into UniProtKB/Swiss-Prot.
DT 16-DEC-2008, sequence version 1.
DT 03-AUG-2022, entry version 90.
DE RecName: Full=Protein SOB FIVE-LIKE 6 {ECO:0000303|PubMed:29467189};
DE Short=AtSOFL6 {ECO:0000303|PubMed:29467189};
GN Name=SOFL6 {ECO:0000303|PubMed:29467189};
GN OrderedLocusNames=At1g58460 {ECO:0000312|Araport:AT1G58460};
GN ORFNames=F9K23.1 {ECO:0000312|EMBL:AAG50642.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Cvi-0;
RX PubMed=21810963; DOI=10.1104/pp.111.181990;
RA Guo Y.-L., Fitz J., Schneeberger K., Ossowski S., Cao J., Weigel D.;
RT "Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-
RT encoding genes in Arabidopsis.";
RL Plant Physiol. 157:757-769(2011).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA de los Reyes C., Quan R., Chen H., Bautista V., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=29467189; DOI=10.1534/g3.118.200040;
RA Tayengwa R., Zhao J., Pierce C.F., Werner B.E., Neff M.M.;
RT "Synopsis of the SOFL plant-specific gene family.";
RL G3 (Bethesda) 8:1281-1290(2018).
CC -!- FUNCTION: Involved in cytokinin-mediated development.
CC {ECO:0000250|UniProtKB:Q67YG7}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250|UniProtKB:Q67YG7}. Nucleus
CC {ECO:0000250|UniProtKB:Q67YG7}.
CC -!- TISSUE SPECIFICITY: Expressed in seedlings, flowers and siliques
CC (PubMed:29467189). Barely detectable in roots and leaves
CC (PubMed:29467189). {ECO:0000269|PubMed:29467189}.
CC -!- DOMAIN: Domains SOFL-A and SOFL-B are required for function in
CC cytokinin-mediated development. {ECO:0000250|UniProtKB:Q9CA45}.
CC -!- SIMILARITY: Belongs to the SOFL plant protein family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG50642.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; JN389445; AEM36347.1; -; Genomic_DNA.
DR EMBL; AC082643; AAG50642.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002684; AEE33551.1; -; Genomic_DNA.
DR EMBL; BT050417; ACI88742.1; -; mRNA.
DR PIR; E96618; E96618.
DR RefSeq; NP_176142.4; NM_104626.5.
DR AlphaFoldDB; B6IDH8; -.
DR STRING; 3702.AT1G58460.1; -.
DR PaxDb; B6IDH8; -.
DR PRIDE; B6IDH8; -.
DR EnsemblPlants; AT1G58460.1; AT1G58460.1; AT1G58460.
DR GeneID; 842215; -.
DR Gramene; AT1G58460.1; AT1G58460.1; AT1G58460.
DR KEGG; ath:AT1G58460; -.
DR Araport; AT1G58460; -.
DR TAIR; locus:2037644; AT1G58460.
DR eggNOG; ENOG502R1SN; Eukaryota.
DR HOGENOM; CLU_1818514_0_0_1; -.
DR InParanoid; B6IDH8; -.
DR OMA; IERFNSC; -.
DR PhylomeDB; B6IDH8; -.
DR PRO; PR:B6IDH8; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; B6IDH8; baseline and differential.
DR GO; GO:0005737; C:cytoplasm; ISS:UniProtKB.
DR GO; GO:0005634; C:nucleus; ISS:UniProtKB.
DR GO; GO:0009691; P:cytokinin biosynthetic process; IEA:UniProtKB-KW.
DR GO; GO:0009690; P:cytokinin metabolic process; ISS:UniProtKB.
DR GO; GO:0009736; P:cytokinin-activated signaling pathway; ISS:UniProtKB.
DR InterPro; IPR044670; SOFL.
DR PANTHER; PTHR33347; PTHR33347; 1.
PE 2: Evidence at transcript level;
KW Cytokinin biosynthesis; Cytokinin signaling pathway; Cytoplasm; Nucleus;
KW Reference proteome.
FT CHAIN 1..177
FT /note="Protein SOB FIVE-LIKE 6"
FT /id="PRO_0000450254"
FT REGION 37..60
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 78..104
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 14..19
FT /note="SOFL-A"
FT /evidence="ECO:0000305|PubMed:29467189"
FT MOTIF 47..56
FT /note="SOFL-B"
FT /evidence="ECO:0000305|PubMed:29467189"
FT CONFLICT 21
FT /note="G -> D (in Ref. 1; AEM36347)"
FT /evidence="ECO:0000305"
FT CONFLICT 68..72
FT /note="HLQQN -> LLQQS (in Ref. 1; AEM36347)"
FT /evidence="ECO:0000305"
FT CONFLICT 81
FT /note="S -> N (in Ref. 1; AEM36347)"
FT /evidence="ECO:0000305"
FT CONFLICT 124
FT /note="H -> HQN (in Ref. 1; AEM36347)"
FT /evidence="ECO:0000305"
FT CONFLICT 132..135
FT /note="HDFC -> DDFS (in Ref. 1; AEM36347)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 177 AA; 20428 MW; 98FB4F6910A2CB47 CRC64;
MDFSDLDYSD AGDSGWTMYL GHSSSVSLHH FDYHNGETKQ EHDEDSSMVS DASSGPPYYC
EETVHEDHLQ QNTQYWCKSK SKNKNKNKKK VHEEQGYSER FNSSFDDTAS SLPVGEEVSA
HKQHQNQYQR FHDFCQSYST RRICKEKVNS GFLQQAFPVD KLALDNQGGD NQRKRRG
