SP1L1_ORYSJ
ID SP1L1_ORYSJ Reviewed; 116 AA.
AC Q7Y1L9; A0A0N7KHG0; C7IZR2;
DT 13-JUN-2012, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2003, sequence version 1.
DT 03-AUG-2022, entry version 80.
DE RecName: Full=Protein SPIRAL1-like 1;
GN OrderedLocusNames=Os03g0417800, LOC_Os03g30430;
GN ORFNames=OsJ_11276, OSJNBb0056B16.13;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Acts in maintaining the cortical microtubules organization
CC essential for anisotropic cell growth. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the SPIRAL1 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAH92201.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC137992; AAP44613.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF96634.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF96635.1; -; Genomic_DNA.
DR EMBL; AP008209; BAH92201.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014959; BAS84713.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ27335.1; -; Genomic_DNA.
DR EMBL; AK121654; BAH00594.1; -; mRNA.
DR RefSeq; XP_015632789.1; XM_015777303.1.
DR AlphaFoldDB; Q7Y1L9; -.
DR STRING; 4530.OS03T0417800-01; -.
DR PaxDb; Q7Y1L9; -.
DR PRIDE; Q7Y1L9; -.
DR EnsemblPlants; Os03t0417800-01; Os03t0417800-01; Os03g0417800.
DR GeneID; 9269934; -.
DR Gramene; Os03t0417800-01; Os03t0417800-01; Os03g0417800.
DR KEGG; osa:9269934; -.
DR eggNOG; ENOG502S4KK; Eukaryota.
DR HOGENOM; CLU_129558_0_0_1; -.
DR InParanoid; Q7Y1L9; -.
DR OMA; TNPQAVQ; -.
DR OrthoDB; 1632388at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR ExpressionAtlas; Q7Y1L9; baseline and differential.
DR Genevisible; Q7Y1L9; OS.
DR GO; GO:0010005; C:cortical microtubule, transverse to long axis; IBA:GO_Central.
DR GO; GO:0043622; P:cortical microtubule organization; IBA:GO_Central.
DR InterPro; IPR039613; SPR1/2/3/4/5.
DR PANTHER; PTHR33403; PTHR33403; 1.
PE 3: Inferred from homology;
KW Microtubule; Reference proteome.
FT CHAIN 1..116
FT /note="Protein SPIRAL1-like 1"
FT /id="PRO_0000417964"
FT REGION 1..116
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 29..45
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 68..94
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 116 AA; 11189 MW; 5060C0B468E163DC CRC64;
MSRGGSAGGG QSSLGYLFGG NEAPKPAAKP APAAAPAPAP APAPAAAVAA PAEKPSPAKA
DATKQIPAGI QGSRSNNNYH RADGQNTGNF LTDRPSTKVH AAPGGGSSLG YLFGGN
