SPH12_ARATH
ID SPH12_ARATH Reviewed; 154 AA.
AC Q680N1; A0MFI1; Q8LD00; Q9XH01;
DT 12-APR-2017, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=S-protein homolog 12 {ECO:0000303|PubMed:10344198};
DE Flags: Precursor;
GN Name=SPH12 {ECO:0000303|PubMed:10344198};
GN OrderedLocusNames=At5g26060 {ECO:0000312|Araport:AT5G26060};
GN ORFNames=T1N24.10 {ECO:0000312|EMBL:AAD40130.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
RA Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
RT "Simultaneous high-throughput recombinational cloning of open reading
RT frames in closed and open configurations.";
RL Plant Biotechnol. J. 4:317-324(2006).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=10344198; DOI=10.1023/a:1006178511787;
RA Ride J.P., Davies E.M., Franklin F.C.H., Marshall D.F.;
RT "Analysis of Arabidopsis genome sequence reveals a large new gene family in
RT plants.";
RL Plant Mol. Biol. 39:927-932(1999).
CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000305|PubMed:10344198}.
CC -!- SIMILARITY: Belongs to the plant self-incompatibility (S1) protein
CC family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAD40130.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=ABK28714.1; Type=Erroneous termination; Note=Extended C-terminus.; Evidence={ECO:0000305};
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DR EMBL; AF149413; AAD40130.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED93519.1; -; Genomic_DNA.
DR EMBL; DQ446985; ABE66182.1; -; mRNA.
DR EMBL; DQ653307; ABK28714.1; ALT_SEQ; mRNA.
DR EMBL; AK175640; BAD43403.1; -; mRNA.
DR EMBL; AK175836; BAD43599.1; -; mRNA.
DR EMBL; AY086297; AAM64369.1; -; mRNA.
DR RefSeq; NP_568481.1; NM_122507.3.
DR AlphaFoldDB; Q680N1; -.
DR SMR; Q680N1; -.
DR STRING; 3702.AT5G26060.1; -.
DR PaxDb; Q680N1; -.
DR PRIDE; Q680N1; -.
DR EnsemblPlants; AT5G26060.1; AT5G26060.1; AT5G26060.
DR GeneID; 832675; -.
DR Gramene; AT5G26060.1; AT5G26060.1; AT5G26060.
DR KEGG; ath:AT5G26060; -.
DR Araport; AT5G26060; -.
DR TAIR; locus:2180562; AT5G26060.
DR eggNOG; ENOG502R1FN; Eukaryota.
DR HOGENOM; CLU_1654536_0_0_1; -.
DR InParanoid; Q680N1; -.
DR OMA; KYGNERW; -.
DR OrthoDB; 1289098at2759; -.
DR PhylomeDB; Q680N1; -.
DR PRO; PR:Q680N1; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q680N1; baseline and differential.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
DR GO; GO:0060320; P:rejection of self pollen; IEA:UniProtKB-KW.
DR InterPro; IPR010264; Self-incomp_S1.
DR PANTHER; PTHR31232; PTHR31232; 1.
DR Pfam; PF05938; Self-incomp_S1; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Secreted; Self-incompatibility; Signal.
FT SIGNAL 1..30
FT /evidence="ECO:0000255"
FT CHAIN 31..154
FT /note="S-protein homolog 12"
FT /id="PRO_5009344601"
FT CONFLICT 12
FT /note="G -> E (in Ref. 5; AAM64369)"
FT /evidence="ECO:0000305"
FT CONFLICT 43..44
FT /note="YR -> W (in Ref. 5; AAM64369)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 154 AA; 18688 MW; F36E5C74AF6AE194 CRC64;
MGTNKIPKTL NGNLVLILII TIMMVTHSHG FQLEIRNELS GRYRKLVYKC WSRDNDFGWR
QNWPGQYKDW SFAISLFHTY FYCHFRTAYG RVDKQLVASW ELKQECGDRR KCTWVVKKDG
LYLRQWKTKF FSNKYGNERW NVYIEHDVLK KSWS
