SPH20_ARATH
ID SPH20_ARATH Reviewed; 135 AA.
AC Q3E9W6;
DT 12-APR-2017, integrated into UniProtKB/Swiss-Prot.
DT 08-NOV-2005, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=S-protein homolog 20 {ECO:0000303|PubMed:10344198};
DE Flags: Precursor;
GN Name=SPH20 {ECO:0000303|PubMed:10344198};
GN OrderedLocusNames=At4g24975 {ECO:0000312|Araport:AT4G24975};
GN ORFNames=F6I7 {ECO:0000305};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Bautista-Mercan V.R., Kim C.J., Chen H., Quan R., De Los Reyes C.,
RA Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Columbia;
RX PubMed=10344198; DOI=10.1023/a:1006178511787;
RA Ride J.P., Davies E.M., Franklin F.C.H., Marshall D.F.;
RT "Analysis of Arabidopsis genome sequence reveals a large new gene family in
RT plants.";
RL Plant Mol. Biol. 39:927-932(1999).
CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000305|PubMed:10344198}.
CC -!- SIMILARITY: Belongs to the plant self-incompatibility (S1) protein
CC family. {ECO:0000305}.
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DR EMBL; AL049657; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CP002687; AEE84987.1; -; Genomic_DNA.
DR EMBL; BT030655; ABR46235.1; -; mRNA.
DR RefSeq; NP_680739.1; NM_148373.2.
DR AlphaFoldDB; Q3E9W6; -.
DR SMR; Q3E9W6; -.
DR PaxDb; Q3E9W6; -.
DR PRIDE; Q3E9W6; -.
DR ProteomicsDB; 245196; -.
DR EnsemblPlants; AT4G24975.1; AT4G24975.1; AT4G24975.
DR GeneID; 828600; -.
DR Gramene; AT4G24975.1; AT4G24975.1; AT4G24975.
DR KEGG; ath:AT4G24975; -.
DR Araport; AT4G24975; -.
DR TAIR; locus:504955469; AT4G24975.
DR eggNOG; ENOG502SVTJ; Eukaryota.
DR HOGENOM; CLU_125658_0_1_1; -.
DR InParanoid; Q3E9W6; -.
DR OMA; CFPWNDQ; -.
DR OrthoDB; 1384229at2759; -.
DR PhylomeDB; Q3E9W6; -.
DR PRO; PR:Q3E9W6; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q3E9W6; baseline and differential.
DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
DR GO; GO:0060320; P:rejection of self pollen; IEA:UniProtKB-KW.
DR InterPro; IPR010264; Self-incomp_S1.
DR PANTHER; PTHR31232; PTHR31232; 1.
DR Pfam; PF05938; Self-incomp_S1; 1.
PE 2: Evidence at transcript level;
KW Glycoprotein; Reference proteome; Secreted; Self-incompatibility; Signal.
FT SIGNAL 1..26
FT /evidence="ECO:0000255"
FT CHAIN 27..135
FT /note="S-protein homolog 20"
FT /id="PRO_5009342700"
FT CARBOHYD 88
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
SQ SEQUENCE 135 AA; 15350 MW; 6AC636C36CF915EB CRC64;
MNGSSAFHII LSVTFMVFLF GGLCEAGVVV NVDIINDIGP NVQLGLHCKS KDKDLGPQSL
APQQHWGFRK TLDFWGVTLF FCHFEWENQS KWFDILVAGR DRNTCAEHPC VWSIRPSGPC
RLTGKEKCFP WNDQY
