SPIB_RAT
ID SPIB_RAT Reviewed; 269 AA.
AC Q5EBA3;
DT 07-JUN-2005, integrated into UniProtKB/Swiss-Prot.
DT 15-MAR-2005, sequence version 1.
DT 25-MAY-2022, entry version 105.
DE RecName: Full=Transcription factor Spi-B;
GN Name=Spib;
OS Rattus norvegicus (Rat).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Rattus.
OX NCBI_TaxID=10116;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Spleen;
RX PubMed=15489334; DOI=10.1101/gr.2596504;
RG The MGC Project Team;
RT "The status, quality, and expansion of the NIH full-length cDNA project:
RT the Mammalian Gene Collection (MGC).";
RL Genome Res. 14:2121-2127(2004).
CC -!- FUNCTION: Sequence specific transcriptional activator which binds to
CC the PU-box, a purine-rich DNA sequence (5'-GAGGAA-3') that can act as a
CC lymphoid-specific enhancer. Promotes development of plasmacytoid
CC dendritic cells (pDCs), also known as type 2 DC precursors (pre-DC2) or
CC natural interferon (IFN)-producing cells. These cells have the capacity
CC to produce large amounts of interferon and block viral replication.
CC Required for B-cell receptor (BCR) signaling, which is necessary for
CC normal B-cell development and antigenic stimulation (By similarity).
CC {ECO:0000250}.
CC -!- SUBUNIT: Can form homotypic interactions. Interacts with IRF4. May also
CC interact with CREBBP, EP300, SPI1/SPI-1/PU.1 related, JUN and TBP (By
CC similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250|UniProtKB:Q01892}.
CC -!- DOMAIN: The protein contains a weakly acidic N-terminal transactivation
CC domain (TAD) followed by a second TAD rich in proline, serine and
CC threonine. Each of these domains may be required for transcriptional
CC activation of a subset of target genes (By similarity). {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the ETS family. {ECO:0000305}.
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DR EMBL; BC089881; AAH89881.1; -; mRNA.
DR RefSeq; NP_001019457.1; NM_001024286.1.
DR AlphaFoldDB; Q5EBA3; -.
DR SMR; Q5EBA3; -.
DR STRING; 10116.ENSRNOP00000026599; -.
DR PaxDb; Q5EBA3; -.
DR GeneID; 499146; -.
DR KEGG; rno:499146; -.
DR UCSC; RGD:1565899; rat.
DR CTD; 6689; -.
DR RGD; 1565899; Spib.
DR eggNOG; KOG3805; Eukaryota.
DR HOGENOM; CLU_066451_2_0_1; -.
DR InParanoid; Q5EBA3; -.
DR OrthoDB; 1272250at2759; -.
DR PhylomeDB; Q5EBA3; -.
DR PRO; PR:Q5EBA3; -.
DR Proteomes; UP000002494; Unplaced.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0001228; F:DNA-binding transcription activator activity, RNA polymerase II-specific; ISO:RGD.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISO:RGD.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; ISO:RGD.
DR GO; GO:1990837; F:sequence-specific double-stranded DNA binding; ISO:RGD.
DR GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
DR GO; GO:0002327; P:immature B cell differentiation; ISO:RGD.
DR GO; GO:0030225; P:macrophage differentiation; ISO:RGD.
DR GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; ISO:RGD.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; ISO:RGD.
DR Gene3D; 1.10.10.10; -; 1.
DR InterPro; IPR000418; Ets_dom.
DR InterPro; IPR046328; ETS_fam.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR11849; PTHR11849; 1.
DR Pfam; PF00178; Ets; 1.
DR PRINTS; PR00454; ETSDOMAIN.
DR SMART; SM00413; ETS; 1.
DR SUPFAM; SSF46785; SSF46785; 1.
DR PROSITE; PS00345; ETS_DOMAIN_1; 1.
DR PROSITE; PS00346; ETS_DOMAIN_2; 1.
DR PROSITE; PS50061; ETS_DOMAIN_3; 1.
PE 2: Evidence at transcript level;
KW Activator; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..269
FT /note="Transcription factor Spi-B"
FT /id="PRO_0000204138"
FT DNA_BIND 176..259
FT /note="ETS"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00237"
FT REGION 1..32
FT /note="TAD1 (Acidic)"
FT REGION 42..63
FT /note="TAD2"
SQ SEQUENCE 269 AA; 29400 MW; B29710EFFEF069B8 CRC64;
MLALEAAQLD GPHLSCLQYP EGVFYDLDSC KSFSYPDSDG GPDSTWGWTE APPAPAIAAY
EAFDPAATAA FAHTQAVQLC YGHGPSPSTY SPVGTLDPAP SLEASGPGLQ VYPSEDFTSQ
TLGSLAYAPY PSPVLSEEED ILLDSPALEV SDSESDEALL AGSEGRGSEA GARKKLRLYQ
FLLELLLRGD MRECVWWVEP GAGVFQFSSK HKELLARRWG QQKGNRKRMT YQKLARALRN
YAKTGEIRKV KRKLTYQFDS ALLPAARRA