SPL15_ORYSI
ID SPL15_ORYSI Reviewed; 1140 AA.
AC A2YX04;
DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 20-MAR-2007, sequence version 1.
DT 03-AUG-2022, entry version 78.
DE RecName: Full=Squamosa promoter-binding-like protein 15;
GN Name=SPL15; ORFNames=OsI_028847;
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [2]
RP TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16861571; DOI=10.1104/pp.106.084475;
RA Xie K., Wu C., Xiong L.;
RT "Genomic organization, differential expression, and interaction of SQUAMOSA
RT promoter-binding-like transcription factors and microRNA156 in rice.";
RL Plant Physiol. 142:280-293(2006).
RN [3]
RP GENE FAMILY.
RX PubMed=17629421; DOI=10.1016/j.gene.2007.02.034;
RA Yang Z., Wang X., Gu S., Hu Z., Xu H., Xu C.;
RT "Comparative study of SBP-box gene family in Arabidopsis and rice.";
RL Gene 407:1-11(2008).
CC -!- FUNCTION: Trans-acting factor that binds specifically to the consensus
CC nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young
CC panicles. {ECO:0000269|PubMed:16861571}.
CC -!- DOMAIN: The SBP-type zinc finger is required for the binding to DNA.
CC {ECO:0000250}.
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DR EMBL; CM000133; EAZ07615.1; -; Genomic_DNA.
DR AlphaFoldDB; A2YX04; -.
DR STRING; 39946.A2YX04; -.
DR EnsemblPlants; BGIOSGA028994-TA; BGIOSGA028994-PA; BGIOSGA028994.
DR Gramene; BGIOSGA028994-TA; BGIOSGA028994-PA; BGIOSGA028994.
DR HOGENOM; CLU_006255_0_0_1; -.
DR OMA; TYPMCQV; -.
DR Proteomes; UP000007015; Chromosome 8.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 4.10.1100.10; -; 1.
DR InterPro; IPR004333; SBP_dom.
DR InterPro; IPR036893; SBP_sf.
DR InterPro; IPR044817; SPL.
DR PANTHER; PTHR31251; PTHR31251; 1.
DR Pfam; PF03110; SBP; 1.
DR SUPFAM; SSF103612; SSF103612; 1.
DR PROSITE; PS51141; ZF_SBP; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..1140
FT /note="Squamosa promoter-binding-like protein 15"
FT /id="PRO_0000308243"
FT ZN_FING 184..261
FT /note="SBP-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT REGION 73..112
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 124..177
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 327..382
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 403..472
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 496..517
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 558..597
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 244..260
FT /note="Bipartite nuclear localization signal"
FT /evidence="ECO:0000255"
FT COMPBIAS 75..91
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 126..140
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 327..373
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 403..443
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 444..463
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 569..597
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 187
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 192
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 209
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 212
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 228
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 231
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 235
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 247
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
SQ SEQUENCE 1140 AA; 124431 MW; C44847DDE87D52AA CRC64;
MQREVGPQVA PPMFLHQIQP LPPHATAAKK RGNPWPAAAV AAAEAKGGGN WNPRMWDWDS
RALTAKPSSD ALRVNAGLSH HQQQQQQSPP AAAKAAEALR QGGGGSGGLN LQLGLREDAA
TPMDVSPAAT TVSSSPSPPA SSAPAQEPVV RPSKRVRSGS PGSASGGGGG GGGGGNSGGG
GGSYPMCQVD DCRADLTNAK DYHRRHKVCE IHGKTTKALV GNQMQRFCQQ CSRFHPLSEF
DEGKRSCRRR LAGHNRRRRK TQPTDVASQL LLPGNQENAA NRTQDIVNLI TVIARLQGSN
VGKLPSIPPI PDKDNLVQII SKINSINNGN SASKSPPSEA VDLNASHSQQ QDSVQRTTNG
FEKQTNGLDK QTNGFDKQAD GFDKQAVPST MDLLAVLSTA LATSNPDSNT SQSQGSSDSS
GNNKSKSQST EPANVVNSHE KSIRVFSATR KNDALERSPE MYKQPDQETP PYLSLRLFGS
TEEDVPCKMD TANKYLSSES SNPLDERSPS SSPPVTHKFF PIRSVDEDAR IADYGEDIAT
VEVSTSRAWR APPLELFKDS ERPIENGSPP NPAYQSCYTS TSCSDHSPST SNSDGQDRTG
RIIFKLFGKE PSTIPGNLRG EIVNWLKHSP NEMEGYIRPG CLVLSMYLSM PAIAWDELEE
NLLQRVNTLV QGSDLDFWRK GRFLVRTDAQ LVSYKDGATR LSKSWRTWNT PELTFVSPIA
VVGGRKTSLI LKGRNLTIPG TQIHCTSTGK YISKEVLCSA YPGTIYDDSG VETFDLPGEP
HLILGRYFIE VENRFRGNSF PVIIANSSVC QELRSLEAEL EGSQFVDGSS DDQAHDARRL
KPKDEVLHFL NELGWLFQKA AASTSAEKSD SSGLDLMYFS TARFRYLLLF SSERDWCSLT
KTLLEILAKR SLASDELSQE TLEMLSEIHL LNRAVKRKSS HMARLLVQFV VVCPDDSKLY
PFLPNVAGPG GLTPLHLAAS IEDAVDIVDA LTDDPQQIGL SCWHSALDDD GQSPETYAKL
RNNNAYNELV AQKLVDRKNN QVTIMVGKEE IHMDQSGNVG EKNKSAIQAL QIRSCNQCAI
LDAGLLRRPM HSRGLLARPY IHSMLAIAAV CVCVCVFMRA LLRFNSGRSF KWERLDFGTI
