SPL16_ORYSJ
ID SPL16_ORYSJ Reviewed; 455 AA.
AC Q6YZE8; B7F2B5;
DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=Squamosa promoter-binding-like protein 16;
GN Name=SPL16; OrderedLocusNames=Os08g0531600, LOC_Os08g41940;
GN ORFNames=P0702E04.9;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP TISSUE SPECIFICITY, INDUCTION, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16861571; DOI=10.1104/pp.106.084475;
RA Xie K., Wu C., Xiong L.;
RT "Genomic organization, differential expression, and interaction of SQUAMOSA
RT promoter-binding-like transcription factors and microRNA156 in rice.";
RL Plant Physiol. 142:280-293(2006).
RN [6]
RP GENE FAMILY.
RX PubMed=17629421; DOI=10.1016/j.gene.2007.02.034;
RA Yang Z., Wang X., Gu S., Hu Z., Xu H., Xu C.;
RT "Comparative study of SBP-box gene family in Arabidopsis and rice.";
RL Gene 407:1-11(2008).
CC -!- FUNCTION: Trans-acting factor that binds specifically to the consensus
CC nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in
CC panicle development. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in young panicles.
CC {ECO:0000269|PubMed:16861571}.
CC -!- INDUCTION: Negatively regulated by microRNAs miR156b and miR156h.
CC {ECO:0000305|PubMed:16861571}.
CC -!- DOMAIN: The SBP-type zinc finger is required for the binding to DNA.
CC {ECO:0000250}.
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DR EMBL; AP005529; BAD11641.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF24248.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT06401.1; -; Genomic_DNA.
DR EMBL; AK109469; BAG98762.1; -; mRNA.
DR RefSeq; XP_015649377.1; XM_015793891.1.
DR AlphaFoldDB; Q6YZE8; -.
DR SMR; Q6YZE8; -.
DR STRING; 4530.OS08T0531600-01; -.
DR PaxDb; Q6YZE8; -.
DR PRIDE; Q6YZE8; -.
DR EnsemblPlants; Os08t0531600-01; Os08t0531600-01; Os08g0531600.
DR GeneID; 4346133; -.
DR Gramene; Os08t0531600-01; Os08t0531600-01; Os08g0531600.
DR KEGG; osa:4346133; -.
DR eggNOG; ENOG502QRGA; Eukaryota.
DR HOGENOM; CLU_042475_0_1_1; -.
DR InParanoid; Q6YZE8; -.
DR OMA; YTHHQIP; -.
DR OrthoDB; 916847at2759; -.
DR PlantReactome; R-OSA-9035605; Regulation of seed size.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR Genevisible; Q6YZE8; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 4.10.1100.10; -; 1.
DR InterPro; IPR004333; SBP_dom.
DR InterPro; IPR036893; SBP_sf.
DR InterPro; IPR044817; SPL.
DR PANTHER; PTHR31251; PTHR31251; 1.
DR Pfam; PF03110; SBP; 1.
DR SUPFAM; SSF103612; SSF103612; 1.
DR PROSITE; PS51141; ZF_SBP; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..455
FT /note="Squamosa promoter-binding-like protein 16"
FT /id="PRO_0000308244"
FT ZN_FING 115..192
FT /note="SBP-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT REGION 182..204
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 175..191
FT /note="Bipartite nuclear localization signal"
FT /evidence="ECO:0000255"
FT BINDING 118
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 123
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 140
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 143
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 159
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 162
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 166
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 178
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
SQ SEQUENCE 455 AA; 46579 MW; 00EF47002AE780C7 CRC64;
MEWDLKMPPA ASWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLKLGG
LGEFGGGGAQ PRVAVAGEPA KGKGPAAAAT GAAAAASSAP AKRPRGAAAA GQQQCPSCAV
DGCKEDLSKC RDYHRRHKVC EAHSKTPLVV VSGREMRFCQ QCSRFHLLQE FDEAKRSCRK
RLDGHNRRRR KPQPDPMNSA SYLASQQGAR FSPFATPRPE ASWTGMIKTE ESPYYTHHQI
PLGISSRQQH FVGSTSDGGR RFPFLQEGEI SFGTGAGAGG VPMDQAAAAA AASVCQPLLK
TVAPPPPPHG GGGSGGGKMF SDGGLTQVLD SDCALSLLSA PANSTAIDVG GGRVVVQPTE
HIPMAQPLIS GLQFGGGGGS SAWFAARPHH QAATGAAATA VVVSTAGFSC PVVESEQLNT
VLSSNDNEMN YNGMFHVGGE GSSDGTSSSL PFSWQ
