SPL9_ORYSJ
ID SPL9_ORYSJ Reviewed; 842 AA.
AC Q6I576; A0A0P0WMC4;
DT 23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=Squamosa promoter-binding-like protein 9;
GN Name=SPL9; OrderedLocusNames=Os05g0408200, LOC_Os05g33810;
GN ORFNames=OSJNBb0014K18.5, P0040B10.14;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16861571; DOI=10.1104/pp.106.084475;
RA Xie K., Wu C., Xiong L.;
RT "Genomic organization, differential expression, and interaction of SQUAMOSA
RT promoter-binding-like transcription factors and microRNA156 in rice.";
RL Plant Physiol. 142:280-293(2006).
RN [7]
RP GENE FAMILY.
RX PubMed=17629421; DOI=10.1016/j.gene.2007.02.034;
RA Yang Z., Wang X., Gu S., Hu Z., Xu H., Xu C.;
RT "Comparative study of SBP-box gene family in Arabidopsis and rice.";
RL Gene 407:1-11(2008).
CC -!- FUNCTION: Trans-acting factor that binds specifically to the consensus
CC nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
CC -!- DOMAIN: The SBP-type zinc finger is required for the binding to DNA.
CC {ECO:0000250}.
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DR EMBL; AC137620; AAT58848.1; -; Genomic_DNA.
DR EMBL; AC137928; AAV59443.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF17436.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS93974.1; -; Genomic_DNA.
DR EMBL; AK100057; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015640052.1; XM_015784566.1.
DR AlphaFoldDB; Q6I576; -.
DR SMR; Q6I576; -.
DR STRING; 4530.OS05T0408200-01; -.
DR PaxDb; Q6I576; -.
DR PRIDE; Q6I576; -.
DR EnsemblPlants; Os05t0408200-01; Os05t0408200-01; Os05g0408200.
DR GeneID; 4338766; -.
DR Gramene; Os05t0408200-01; Os05t0408200-01; Os05g0408200.
DR KEGG; osa:4338766; -.
DR eggNOG; ENOG502QUTN; Eukaryota.
DR HOGENOM; CLU_019548_1_0_1; -.
DR InParanoid; Q6I576; -.
DR OMA; WGDDSIG; -.
DR OrthoDB; 248702at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q6I576; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 4.10.1100.10; -; 1.
DR InterPro; IPR004333; SBP_dom.
DR InterPro; IPR036893; SBP_sf.
DR InterPro; IPR044817; SPL.
DR PANTHER; PTHR31251; PTHR31251; 1.
DR Pfam; PF03110; SBP; 1.
DR SUPFAM; SSF103612; SSF103612; 1.
DR PROSITE; PS51141; ZF_SBP; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..842
FT /note="Squamosa promoter-binding-like protein 9"
FT /id="PRO_0000308234"
FT ZN_FING 168..245
FT /note="SBP-type; atypical"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 59..97
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 140..168
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 236..256
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 228..244
FT /note="Bipartite nuclear localization signal"
FT /evidence="ECO:0000255"
FT BINDING 171
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 176
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 193
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 196
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 212
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 215
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 219
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT BINDING 231
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00470"
FT CONFLICT 697
FT /note="V -> A (in Ref. 5; AK100057)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 842 AA; 92018 MW; A1558F54B13A4F2F CRC64;
MDAPGGGGGG GGGGGGVDAG EPVWDWGNLL DFAVHDDDSL VLPWGDDSIG IEADPAEAAL
LPPAPSPQPA EAEAEAAGPA SLPSSMQAEG SKRRVRKRDP RLVCPNYLAG RVPCACPEID
EMAAALEVED VATELLAGAR KKPKGAGRGS GAAVGGSGGG ASRGTPAEMK CQVPGCEADI
RELKGYHRRH RVCLRCAHAA AVMLDGVQKR YCQQCGKFHI LLDFDEDKRS CRRKLERHNK
RRRRKPDSKG ILEKDIDDQL DFSADGSGDG ELREENIDVT TSETLETVLS NKVLDRETPV
GSDDVLSSPT CAQPSLQIDQ SKSLVTFAAS VEACLGTKQE NTKLTNSPVH DTKSTYSSSC
PTGRVSFKLY DWNPAEFPRR LRHQIFEWLS SMPVELEGYI RPGCTILTVF VAMPQHMWDK
LSEDTGNLVK SLVNAPNSLL LGKGAFFIHV NNMIFQVLKD GATLTSTRLE VQSPRIHYVH
PSWFEAGKPI DLILCGSSLD QPKFRSLVSF DGLYLKHDCR RILSHETFDC IGSGEHILDS
QHEIFRINIT TSKLDTHGPA FVEVENMFGL SNFVPILVGS KHLCSELEQI HDALCGSSDI
SSDPCELRGL RQTAMLGFLI DIGWLIRKPS IDEFQNLLSL ANIQRWICMM KFLIQNDFIN
VLEIIVNSLD NIIGSELLSN LEKGRLENHV TEFLGYVSEA RNIVDNRPKY DKQRQVDTRW
AGDYAPNQPK LGISVPLAES TGTSGEHDLH STNAASGEEE NMPLVTKALP HRQCCHPETS
ARWLNAASIG AFPGGAMRMR LATTVVIGAV VCFAACVVLF HPHRVGVLAA PVKRYLSRNY
SS
