SPNS3_DANRE
ID SPNS3_DANRE Reviewed; 498 AA.
AC A2CER7; A2SWM3;
DT 02-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 20-FEB-2007, sequence version 1.
DT 03-AUG-2022, entry version 85.
DE RecName: Full=Protein spinster homolog 3;
DE AltName: Full=Spinster-like protein 3;
GN Name=spns3; Synonyms=spinl3; ORFNames=si:ch211-117m20.8;
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Danionidae; Danioninae; Danio.
OX NCBI_TaxID=7955;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen;
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M.,
RA Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I.,
RA Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.,
RA White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y.,
RA Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B.,
RA Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S.,
RA Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S.,
RA Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N.,
RA Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J.,
RA Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J.,
RA Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D.,
RA McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S.,
RA Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E.,
RA Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A.,
RA Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P.,
RA Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C.,
RA Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C.,
RA Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M.,
RA Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G.,
RA Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F.,
RA Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M.,
RA Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M.,
RA de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C.,
RA Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the human
RT genome.";
RL Nature 496:498-503(2013).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 98-498.
RX PubMed=19062281; DOI=10.1016/j.cub.2008.10.061;
RA Osborne N., Brand-Arzamendi K., Ober E.A., Jin S.-W., Verkade H.,
RA Holtzman N.G., Yelon D., Stainier D.Y.R.;
RT "The spinster homolog, two of hearts, is required for sphingosine 1-
RT phosphate signaling in zebrafish.";
RL Curr. Biol. 18:1882-1888(2008).
CC -!- FUNCTION: Sphingolipid transporter. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the major facilitator superfamily. Spinster (TC
CC 2.A.1.49) family. {ECO:0000305}.
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DR EMBL; CR753844; CAM15238.1; -; Genomic_DNA.
DR EMBL; DQ360112; ABC88834.1; -; mRNA.
DR RefSeq; NP_001093506.1; NM_001100036.1.
DR RefSeq; XP_009299816.1; XM_009301541.1.
DR RefSeq; XP_009299817.1; XM_009301542.2.
DR RefSeq; XP_017211639.1; XM_017356150.1.
DR RefSeq; XP_017211640.1; XM_017356151.1.
DR AlphaFoldDB; A2CER7; -.
DR SMR; A2CER7; -.
DR STRING; 7955.ENSDARP00000051391; -.
DR PaxDb; A2CER7; -.
DR Ensembl; ENSDART00000051392; ENSDARP00000051391; ENSDARG00000035459.
DR Ensembl; ENSDART00000127787; ENSDARP00000110713; ENSDARG00000035459.
DR Ensembl; ENSDART00000182367; ENSDARP00000145247; ENSDARG00000035459.
DR Ensembl; ENSDART00000188528; ENSDARP00000150728; ENSDARG00000115176.
DR GeneID; 568387; -.
DR KEGG; dre:568387; -.
DR CTD; 201305; -.
DR ZFIN; ZDB-GENE-060531-7; spns3.
DR eggNOG; KOG1330; Eukaryota.
DR GeneTree; ENSGT00390000005976; -.
DR InParanoid; A2CER7; -.
DR OMA; WHWAFRI; -.
DR OrthoDB; 891881at2759; -.
DR PhylomeDB; A2CER7; -.
DR PRO; PR:A2CER7; -.
DR Proteomes; UP000000437; Genome assembly.
DR Proteomes; UP000814640; Chromosome 5.
DR Bgee; ENSDARG00000035459; Expressed in granulocyte and 16 other tissues.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0022857; F:transmembrane transporter activity; IEA:InterPro.
DR GO; GO:0006869; P:lipid transport; IEA:UniProtKB-KW.
DR CDD; cd17328; MFS_spinster_like; 1.
DR Gene3D; 1.20.1250.20; -; 1.
DR InterPro; IPR011701; MFS.
DR InterPro; IPR020846; MFS_dom.
DR InterPro; IPR044770; MFS_spinster-like.
DR InterPro; IPR036259; MFS_trans_sf.
DR PANTHER; PTHR23505; PTHR23505; 1.
DR Pfam; PF07690; MFS_1; 1.
DR SUPFAM; SSF103473; SSF103473; 1.
DR PROSITE; PS50850; MFS; 1.
PE 2: Evidence at transcript level;
KW Lipid transport; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix; Transport.
FT CHAIN 1..498
FT /note="Protein spinster homolog 3"
FT /id="PRO_0000305048"
FT TRANSMEM 49..71
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 87..107
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 114..134
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 148..168
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 175..195
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 207..227
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 260..280
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 309..329
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 343..363
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 373..393
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 407..427
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 451..471
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 498 AA; 54289 MW; 47AC44BCBC2DE615 CRC64;
MASDQHRPKP RLSLRSSTTI RYGSMSSEHP DGDPSTPQTT SISQRRSYIA VAVLCYINLL
NYMDRYTIAG VLLRIQKFFF ISDSTSGLLQ TVFICSFMFL APVFGYLGDR YDRKLIMIVG
LVMWIVTTLG SSFVRKSHFW VLVATRALVG TGEASYSTIA PTIIGDLFAG SKRTLMISFF
YIFIPVGSGL GYIIGATVAD ATGDWRWALR VSPALGGLGL LLLVFLIPNP PRGASDNGGA
NMETTSYTED IKYLLKNRSF VWSSLGVTAM AFVTGALAFW TPTFLSRAQV TQGLKQPCKE
EPCDSVDSYI FGAITVVTGV VGVFLGTCIS KKLRDRVPNA DPLICAVGML SSSPCFFIAI
VLASTSIPAT YTFIAIGETL LSLNWAILAD ILLYVVVPNR RATAEALQIM VCHLLGDAGS
PYLIGAISDS LSKYNTTDPS WDFRRLEYSV LLCPFIGVLG GLFFLMTSLY IKEDRKAAEL
LTSGQTPQPE ITTVSESV