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SPTC2_HUMAN
ID   SPTC2_HUMAN             Reviewed;         562 AA.
AC   O15270; Q16685;
DT   30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
DT   01-JAN-1998, sequence version 1.
DT   03-AUG-2022, entry version 194.
DE   RecName: Full=Serine palmitoyltransferase 2 {ECO:0000305};
DE            EC=2.3.1.50 {ECO:0000269|PubMed:19416851};
DE   AltName: Full=Long chain base biosynthesis protein 2;
DE            Short=LCB 2;
DE   AltName: Full=Long chain base biosynthesis protein 2a;
DE            Short=LCB2a;
DE   AltName: Full=Serine-palmitoyl-CoA transferase 2;
DE            Short=SPT 2;
GN   Name=SPTLC2 {ECO:0000312|HGNC:HGNC:11278}; Synonyms=KIAA0526, LCB2;
OS   Homo sapiens (Human).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
OX   NCBI_TaxID=9606;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   TISSUE=Pancreas;
RX   PubMed=9363775; DOI=10.1111/j.1432-1033.1997.00239.x;
RA   Weiss B., Stoffel W.;
RT   "Human and murine serine-palmitoyl-CoA transferase. Cloning, expression and
RT   characterization of the key enzyme in sphingolipid synthesis.";
RL   Eur. J. Biochem. 249:239-247(1997).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Brain;
RX   PubMed=9628581; DOI=10.1093/dnares/5.1.31;
RA   Nagase T., Ishikawa K., Miyajima N., Tanaka A., Kotani H., Nomura N.,
RA   Ohara O.;
RT   "Prediction of the coding sequences of unidentified human genes. IX. The
RT   complete sequences of 100 new cDNA clones from brain which can code for
RT   large proteins in vitro.";
RL   DNA Res. 5:31-39(1998).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=12508121; DOI=10.1038/nature01348;
RA   Heilig R., Eckenberg R., Petit J.-L., Fonknechten N., Da Silva C.,
RA   Cattolico L., Levy M., Barbe V., De Berardinis V., Ureta-Vidal A.,
RA   Pelletier E., Vico V., Anthouard V., Rowen L., Madan A., Qin S., Sun H.,
RA   Du H., Pepin K., Artiguenave F., Robert C., Cruaud C., Bruels T.,
RA   Jaillon O., Friedlander L., Samson G., Brottier P., Cure S., Segurens B.,
RA   Aniere F., Samain S., Crespeau H., Abbasi N., Aiach N., Boscus D.,
RA   Dickhoff R., Dors M., Dubois I., Friedman C., Gouyvenoux M., James R.,
RA   Madan A., Mairey-Estrada B., Mangenot S., Martins N., Menard M., Oztas S.,
RA   Ratcliffe A., Shaffer T., Trask B., Vacherie B., Bellemere C., Belser C.,
RA   Besnard-Gonnet M., Bartol-Mavel D., Boutard M., Briez-Silla S.,
RA   Combette S., Dufosse-Laurent V., Ferron C., Lechaplais C., Louesse C.,
RA   Muselet D., Magdelenat G., Pateau E., Petit E., Sirvain-Trukniewicz P.,
RA   Trybou A., Vega-Czarny N., Bataille E., Bluet E., Bordelais I., Dubois M.,
RA   Dumont C., Guerin T., Haffray S., Hammadi R., Muanga J., Pellouin V.,
RA   Robert D., Wunderle E., Gauguet G., Roy A., Sainte-Marthe L., Verdier J.,
RA   Verdier-Discala C., Hillier L.W., Fulton L., McPherson J., Matsuda F.,
RA   Wilson R., Scarpelli C., Gyapay G., Wincker P., Saurin W., Quetier F.,
RA   Waterston R., Hood L., Weissenbach J.;
RT   "The DNA sequence and analysis of human chromosome 14.";
RL   Nature 421:601-607(2003).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   TISSUE=Lymph;
RX   PubMed=15489334; DOI=10.1101/gr.2596504;
RG   The MGC Project Team;
RT   "The status, quality, and expansion of the NIH full-length cDNA project:
RT   the Mammalian Gene Collection (MGC).";
RL   Genome Res. 14:2121-2127(2004).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 60-470.
RC   TISSUE=Pancreatic islet;
RX   PubMed=8921873; DOI=10.1016/0378-1119(96)00309-5;
RA   Nagiec M.M., Lester R.L., Dickson R.C.;
RT   "Sphingolipid synthesis: identification and characterization of mammalian
RT   cDNAs encoding the Lcb2 subunit of serine palmitoyltransferase.";
RL   Gene 177:237-241(1996).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 68-144.
RC   TISSUE=Pancreatic islet;
RX   PubMed=7506601; DOI=10.1093/hmg/2.11.1793;
RA   Takeda J., Yano H., Eng S., Zeng Y., Bell G.I.;
RT   "A molecular inventory of human pancreatic islets: sequence analysis of
RT   1000 cDNA clones.";
RL   Hum. Mol. Genet. 2:1793-1798(1993).
RN   [7]
RP   TISSUE SPECIFICITY.
RX   PubMed=17023427; DOI=10.1074/jbc.m608066200;
RA   Hornemann T., Richard S., Ruetti M.F., Wei Y., von Eckardstein A.;
RT   "Cloning and initial characterization of a new subunit for mammalian
RT   serine-palmitoyltransferase.";
RL   J. Biol. Chem. 281:37275-37281(2006).
RN   [8]
RP   FUNCTION.
RX   PubMed=19648650; DOI=10.1074/jbc.m109.023192;
RA   Hornemann T., Penno A., Ruetti M.F., Ernst D., Kivrak-Pfiffner F.,
RA   Rohrer L., von Eckardstein A.;
RT   "The SPTLC3 subunit of serine palmitoyltransferase generates short chain
RT   sphingoid bases.";
RL   J. Biol. Chem. 284:26322-26330(2009).
RN   [9]
RP   FUNCTION, CATALYTIC ACTIVITY, AND IDENTIFICATION IN THE SPT COMPLEX.
RX   PubMed=19416851; DOI=10.1073/pnas.0811269106;
RA   Han G., Gupta S.D., Gable K., Niranjanakumari S., Moitra P., Eichler F.,
RA   Brown R.H. Jr., Harmon J.M., Dunn T.M.;
RT   "Identification of small subunits of mammalian serine palmitoyltransferase
RT   that confer distinct acyl-CoA substrate specificities.";
RL   Proc. Natl. Acad. Sci. U.S.A. 106:8186-8191(2009).
RN   [10]
RP   FUNCTION, VARIANTS HSAN1C MET-359; VAL-382 AND PHE-504, AND
RP   CHARACTERIZATION OF VARIANTS HSAN1C MET-359; VAL-382 AND PHE-504.
RX   PubMed=20920666; DOI=10.1016/j.ajhg.2010.09.010;
RA   Rotthier A., Auer-Grumbach M., Janssens K., Baets J., Penno A.,
RA   Almeida-Souza L., Van Hoof K., Jacobs A., De Vriendt E.,
RA   Schlotter-Weigel B., Loscher W., Vondracek P., Seeman P., De Jonghe P.,
RA   Van Dijck P., Jordanova A., Hornemann T., Timmerman V.;
RT   "Mutations in the SPTLC2 subunit of serine palmitoyltransferase cause
RT   hereditary sensory and autonomic neuropathy type I.";
RL   Am. J. Hum. Genet. 87:513-522(2010).
RN   [11]
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=21269460; DOI=10.1186/1752-0509-5-17;
RA   Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T.,
RA   Bennett K.L., Superti-Furga G., Colinge J.;
RT   "Initial characterization of the human central proteome.";
RL   BMC Syst. Biol. 5:17-17(2011).
RN   [12]
RP   INDUCTION IN ALZHEIMER DISEASE.
RX   PubMed=21994399; DOI=10.1523/jneurosci.3883-11.2011;
RA   Geekiyanage H., Chan C.;
RT   "MicroRNA-137/181c regulates serine palmitoyltransferase and in turn
RT   amyloid beta, novel targets in sporadic Alzheimer's disease.";
RL   J. Neurosci. 31:14820-14830(2011).
RN   [13]
RP   VARIANT HSAN1C PRO-182, CHARACTERIZATION OF VARIANT HSAN1C PRO-182, AND
RP   PATHOLOGICAL MECHANISM.
RX   PubMed=23658386; DOI=10.1212/wnl.0b013e318295d789;
RA   Murphy S.M., Ernst D., Wei Y., Laura M., Liu Y.T., Polke J., Blake J.,
RA   Winer J., Houlden H., Hornemann T., Reilly M.M.;
RT   "Hereditary sensory and autonomic neuropathy type 1 (HSANI) caused by a
RT   novel mutation in SPTLC2.";
RL   Neurology 80:2106-2111(2013).
RN   [14]
RP   VARIANT HSAN1C TRP-183, AND CHARACTERIZATION OF VARIANT HSAN1C TRP-183.
RX   PubMed=26573920; DOI=10.1007/s12017-015-8379-1;
RA   Suriyanarayanan S., Auranen M., Toppila J., Paetau A., Shcherbii M.,
RA   Palin E., Wei Y., Lohioja T., Schlotter-Weigel B., Schoen U., Abicht A.,
RA   Rautenstrauss B., Tyynismaa H., Walter M.C., Hornemann T., Ylikallio E.;
RT   "The Variant p.(Arg183Trp) in SPTLC2 Causes Late-Onset Hereditary Sensory
RT   Neuropathy.";
RL   NeuroMolecular Med. 18:81-90(2016).
CC   -!- FUNCTION: Serine palmitoyltransferase (SPT). The heterodimer formed
CC       with LCB1/SPTLC1 constitutes the catalytic core. The composition of the
CC       serine palmitoyltransferase (SPT) complex determines the substrate
CC       preference. The SPTLC1-SPTLC2-SPTSSA complex shows a strong preference
CC       for C16-CoA substrate, while the SPTLC1-SPTLC2-SPTSSB complex displays
CC       a preference for C18-CoA substrate. Plays an important role in de novo
CC       sphyngolipid biosynthesis which is crucial for adipogenesis (By
CC       similarity). {ECO:0000250|UniProtKB:P97363,
CC       ECO:0000269|PubMed:19416851, ECO:0000269|PubMed:19648650,
CC       ECO:0000269|PubMed:20920666}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=H(+) + hexadecanoyl-CoA + L-serine = 3-oxosphinganine + CO2 +
CC         CoA; Xref=Rhea:RHEA:14761, ChEBI:CHEBI:15378, ChEBI:CHEBI:16526,
CC         ChEBI:CHEBI:33384, ChEBI:CHEBI:57287, ChEBI:CHEBI:57379,
CC         ChEBI:CHEBI:58299; EC=2.3.1.50;
CC         Evidence={ECO:0000269|PubMed:19416851};
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=H(+) + L-serine + octadecanoyl-CoA = 3-oxoeicosasphinganine +
CC         CO2 + CoA; Xref=Rhea:RHEA:33683, ChEBI:CHEBI:15378,
CC         ChEBI:CHEBI:16526, ChEBI:CHEBI:33384, ChEBI:CHEBI:57287,
CC         ChEBI:CHEBI:57394, ChEBI:CHEBI:65073;
CC         Evidence={ECO:0000269|PubMed:19416851};
CC       PhysiologicalDirection=left-to-right; Xref=Rhea:RHEA:33684;
CC         Evidence={ECO:0000269|PubMed:19416851};
CC   -!- COFACTOR:
CC       Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC         Evidence={ECO:0000250};
CC   -!- PATHWAY: Lipid metabolism; sphingolipid metabolism.
CC   -!- SUBUNIT: Heterodimer with SPTLC1. Component of the serine
CC       palmitoyltransferase (SPT) complex, composed of SPTLC1, either SPTLC2
CC       or SPTLC3, and either SPTSSA or SPTSSB. The composition of the complex
CC       will define the substrate specificity. {ECO:0000269|PubMed:19416851}.
CC   -!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
CC       {ECO:0000250|UniProtKB:P97363}; Single-pass membrane protein
CC       {ECO:0000250|UniProtKB:P97363}.
CC   -!- TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:17023427}.
CC   -!- INDUCTION: Expression at protein level is highly increased in brains of
CC       patients with Alzheimer disease. No changes are observed at mRNA level.
CC       {ECO:0000269|PubMed:21994399}.
CC   -!- DISEASE: Neuropathy, hereditary sensory and autonomic, 1C (HSAN1C)
CC       [MIM:613640]: A form of hereditary sensory and autonomic neuropathy, a
CC       genetically and clinically heterogeneous group of disorders
CC       characterized by degeneration of dorsal root and autonomic ganglion
CC       cells, and by prominent sensory abnormalities with a variable degree of
CC       motor and autonomic dysfunction. The neurological phenotype is often
CC       complicated by severe infections, osteomyelitis, and amputations.
CC       HSAN1C symptoms include loss of touch and vibration in the feet,
CC       dysesthesia and severe panmodal sensory loss in the upper and lower
CC       limbs, distal lower limb sensory loss with ulceration and
CC       osteomyelitis, and distal muscle weakness.
CC       {ECO:0000269|PubMed:20920666, ECO:0000269|PubMed:23658386,
CC       ECO:0000269|PubMed:26573920}. Note=The disease is caused by variants
CC       affecting the gene represented in this entry. SPTLC2 disease mutations
CC       cause a shift in the substrate specificity of SPT resulting in the
CC       alternative use of L-alanine and L-glycine over its canonical substrate
CC       L-serine. This leads to the production of 1-deoxysphingolipids that
CC       cannot be correctly metabolized (PubMed:23658386).
CC       {ECO:0000269|PubMed:23658386, ECO:0000269|PubMed:26573920}.
CC   -!- SIMILARITY: Belongs to the class-II pyridoxal-phosphate-dependent
CC       aminotransferase family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAA25452.2; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
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DR   EMBL; Y08686; CAA69942.1; -; mRNA.
DR   EMBL; AB011098; BAA25452.2; ALT_INIT; mRNA.
DR   EMBL; AF111168; AAD09621.1; -; Genomic_DNA.
DR   EMBL; BC005123; AAH05123.1; -; mRNA.
DR   EMBL; U15555; AAC50871.1; -; mRNA.
DR   CCDS; CCDS9865.1; -.
DR   PIR; I38873; I38873.
DR   RefSeq; NP_004854.1; NM_004863.3.
DR   PDB; 6M4N; EM; 3.80 A; B/F=1-562.
DR   PDB; 6M4O; EM; 3.40 A; T=1-562.
DR   PDB; 7CQI; EM; 3.20 A; T=1-562.
DR   PDB; 7CQK; EM; 3.30 A; T=1-562.
DR   PDB; 7K0I; EM; 3.30 A; B/E=1-544.
DR   PDB; 7K0J; EM; 3.10 A; B=1-562.
DR   PDB; 7K0K; EM; 2.60 A; B=1-562.
DR   PDB; 7K0L; EM; 3.40 A; B=1-562.
DR   PDB; 7K0M; EM; 2.90 A; B/F=1-544.
DR   PDB; 7K0N; EM; 3.10 A; B/F=1-562.
DR   PDB; 7K0O; EM; 3.10 A; B/F=1-544.
DR   PDB; 7K0P; EM; 3.10 A; B/F=1-544.
DR   PDB; 7K0Q; EM; 3.30 A; B=1-562.
DR   PDBsum; 6M4N; -.
DR   PDBsum; 6M4O; -.
DR   PDBsum; 7CQI; -.
DR   PDBsum; 7CQK; -.
DR   PDBsum; 7K0I; -.
DR   PDBsum; 7K0J; -.
DR   PDBsum; 7K0K; -.
DR   PDBsum; 7K0L; -.
DR   PDBsum; 7K0M; -.
DR   PDBsum; 7K0N; -.
DR   PDBsum; 7K0O; -.
DR   PDBsum; 7K0P; -.
DR   PDBsum; 7K0Q; -.
DR   AlphaFoldDB; O15270; -.
DR   SMR; O15270; -.
DR   BioGRID; 114894; 116.
DR   ComplexPortal; CPX-6663; Serine palmitoyltransferase complex, SPTLC1-SPTLC2-SPTSSA variant.
DR   ComplexPortal; CPX-6664; Serine palmitoyltransferase complex, SPTLC1-SPTLC2-SPTSSB variant.
DR   CORUM; O15270; -.
DR   DIP; DIP-34604N; -.
DR   IntAct; O15270; 30.
DR   MINT; O15270; -.
DR   STRING; 9606.ENSP00000216484; -.
DR   BindingDB; O15270; -.
DR   ChEMBL; CHEMBL1250344; -.
DR   DrugBank; DB00114; Pyridoxal phosphate.
DR   DrugBank; DB00133; Serine.
DR   iPTMnet; O15270; -.
DR   PhosphoSitePlus; O15270; -.
DR   SwissPalm; O15270; -.
DR   BioMuta; SPTLC2; -.
DR   EPD; O15270; -.
DR   jPOST; O15270; -.
DR   MassIVE; O15270; -.
DR   MaxQB; O15270; -.
DR   PaxDb; O15270; -.
DR   PeptideAtlas; O15270; -.
DR   PRIDE; O15270; -.
DR   ProteomicsDB; 48559; -.
DR   Antibodypedia; 26092; 278 antibodies from 29 providers.
DR   DNASU; 9517; -.
DR   Ensembl; ENST00000216484.7; ENSP00000216484.2; ENSG00000100596.8.
DR   GeneID; 9517; -.
DR   KEGG; hsa:9517; -.
DR   MANE-Select; ENST00000216484.7; ENSP00000216484.2; NM_004863.4; NP_004854.1.
DR   UCSC; uc001xub.4; human.
DR   CTD; 9517; -.
DR   DisGeNET; 9517; -.
DR   GeneCards; SPTLC2; -.
DR   HGNC; HGNC:11278; SPTLC2.
DR   HPA; ENSG00000100596; Low tissue specificity.
DR   MalaCards; SPTLC2; -.
DR   MIM; 605713; gene.
DR   MIM; 613640; phenotype.
DR   neXtProt; NX_O15270; -.
DR   OpenTargets; ENSG00000100596; -.
DR   Orphanet; 36386; Hereditary sensory and autonomic neuropathy type 1.
DR   PharmGKB; PA36107; -.
DR   VEuPathDB; HostDB:ENSG00000100596; -.
DR   eggNOG; KOG1357; Eukaryota.
DR   GeneTree; ENSGT00940000155786; -.
DR   HOGENOM; CLU_015846_7_1_1; -.
DR   InParanoid; O15270; -.
DR   OMA; IEDEPPY; -.
DR   OrthoDB; 438936at2759; -.
DR   PhylomeDB; O15270; -.
DR   TreeFam; TF300452; -.
DR   BioCyc; MetaCyc:HS02117-MON; -.
DR   BRENDA; 2.3.1.50; 2681.
DR   PathwayCommons; O15270; -.
DR   Reactome; R-HSA-1660661; Sphingolipid de novo biosynthesis.
DR   SABIO-RK; O15270; -.
DR   SignaLink; O15270; -.
DR   UniPathway; UPA00222; -.
DR   BioGRID-ORCS; 9517; 98 hits in 1094 CRISPR screens.
DR   ChiTaRS; SPTLC2; human.
DR   GeneWiki; SPTLC2; -.
DR   GenomeRNAi; 9517; -.
DR   Pharos; O15270; Tchem.
DR   PRO; PR:O15270; -.
DR   Proteomes; UP000005640; Chromosome 14.
DR   RNAct; O15270; protein.
DR   Bgee; ENSG00000100596; Expressed in corpus callosum and 192 other tissues.
DR   ExpressionAtlas; O15270; baseline and differential.
DR   Genevisible; O15270; HS.
DR   GO; GO:0005789; C:endoplasmic reticulum membrane; TAS:Reactome.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0017059; C:serine C-palmitoyltransferase complex; IDA:UniProtKB.
DR   GO; GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.
DR   GO; GO:0004758; F:serine C-palmitoyltransferase activity; IDA:UniProtKB.
DR   GO; GO:0060612; P:adipose tissue development; ISS:UniProtKB.
DR   GO; GO:0046513; P:ceramide biosynthetic process; IDA:MGI.
DR   GO; GO:1904504; P:positive regulation of lipophagy; IDA:MGI.
DR   GO; GO:0046511; P:sphinganine biosynthetic process; IEA:Ensembl.
DR   GO; GO:0030148; P:sphingolipid biosynthetic process; IDA:UniProtKB.
DR   GO; GO:0006686; P:sphingomyelin biosynthetic process; IEA:Ensembl.
DR   GO; GO:0046512; P:sphingosine biosynthetic process; IDA:ComplexPortal.
DR   Gene3D; 3.40.640.10; -; 1.
DR   Gene3D; 3.90.1150.10; -; 1.
DR   InterPro; IPR001917; Aminotrans_II_pyridoxalP_BS.
DR   InterPro; IPR004839; Aminotransferase_I/II.
DR   InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR   InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR   InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR   Pfam; PF00155; Aminotran_1_2; 1.
DR   SUPFAM; SSF53383; SSF53383; 1.
DR   PROSITE; PS00599; AA_TRANSFER_CLASS_2; 1.
PE   1: Evidence at protein level;
KW   3D-structure; Acyltransferase; Disease variant; Endoplasmic reticulum;
KW   Lipid metabolism; Membrane; Neurodegeneration; Neuropathy;
KW   Pyridoxal phosphate; Reference proteome; Sphingolipid metabolism;
KW   Transferase; Transmembrane; Transmembrane helix.
FT   CHAIN           1..562
FT                   /note="Serine palmitoyltransferase 2"
FT                   /id="PRO_0000163858"
FT   TRANSMEM        67..87
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   MOD_RES         379
FT                   /note="N6-(pyridoxal phosphate)lysine"
FT                   /evidence="ECO:0000250"
FT   VARIANT         182
FT                   /note="A -> P (in HSAN1C; reduced activity with L-serine as
FT                   substrate; increased activity toward L-alanine resulting in
FT                   the accumulation of 1-deoxy-sphinganine;
FT                   dbSNP:rs864621998)"
FT                   /evidence="ECO:0000269|PubMed:23658386"
FT                   /id="VAR_069525"
FT   VARIANT         183
FT                   /note="R -> W (in HSAN1C; late onset; slightly increased
FT                   activity with L-serine as substrate; highly increased
FT                   activity toward L-alanine resulting in the accumulation of
FT                   1-deoxy-sphinganine; dbSNP:rs775437084)"
FT                   /evidence="ECO:0000269|PubMed:26573920"
FT                   /id="VAR_081286"
FT   VARIANT         359
FT                   /note="V -> M (in HSAN1C; partial loss of normal activity
FT                   as measured by reduced formation of sphinganine; affects
FT                   enzymatic affinity resulting in the accumulation of the
FT                   alternative metabolite 1-deoxy-sphinganine;
FT                   dbSNP:rs267607090)"
FT                   /evidence="ECO:0000269|PubMed:20920666"
FT                   /id="VAR_064798"
FT   VARIANT         382
FT                   /note="G -> V (in HSAN1C; complete loss of normal activity
FT                   as measured by lack of formation of sphinganine; affects
FT                   enzymatic affinity resulting in the accumulation of the
FT                   alternative metabolite 1-deoxy-sphinganine;
FT                   dbSNP:rs267607089)"
FT                   /evidence="ECO:0000269|PubMed:20920666"
FT                   /id="VAR_064799"
FT   VARIANT         504
FT                   /note="I -> F (in HSAN1C; partial loss of normal activity
FT                   as measured by reduced formation of sphinganine; affects
FT                   enzymatic affinity resulting in the accumulation of the
FT                   alternative metabolite 1-deoxy-sphinganine;
FT                   dbSNP:rs267607091)"
FT                   /evidence="ECO:0000269|PubMed:20920666"
FT                   /id="VAR_064800"
FT   CONFLICT        61..64
FT                   /note="EAFE -> TLAR (in Ref. 5; AAC50871)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        436..469
FT                   /note="KECVQQLAENTRYFRRRLKEMGFIIYGNEDSPVV -> NGITIHEVVQTRNT
FT                   YHRFSPLSPVFSHQCLWIML (in Ref. 5)"
FT                   /evidence="ECO:0000305"
FT   STRAND          50..52
FT                   /evidence="ECO:0007829|PDB:6M4O"
FT   STRAND          54..57
FT                   /evidence="ECO:0007829|PDB:7CQI"
FT   HELIX           68..93
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          100..102
FT                   /evidence="ECO:0007829|PDB:7CQI"
FT   HELIX           106..108
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          109..111
FT                   /evidence="ECO:0007829|PDB:7K0J"
FT   HELIX           117..120
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           121..125
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           128..133
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          137..140
FT                   /evidence="ECO:0007829|PDB:7CQI"
FT   STRAND          143..152
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          154..159
FT                   /evidence="ECO:0007829|PDB:7K0N"
FT   STRAND          161..172
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           178..180
FT                   /evidence="ECO:0007829|PDB:7CQI"
FT   STRAND          184..186
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           187..199
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          204..206
FT                   /evidence="ECO:0007829|PDB:7K0N"
FT   TURN            207..211
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           214..227
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          229..236
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           238..249
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          255..259
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           264..272
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          275..280
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           285..298
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          300..303
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          310..318
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   TURN            319..322
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           327..337
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          340..344
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   TURN            346..351
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          352..356
FT                   /evidence="ECO:0007829|PDB:7K0N"
FT   HELIX           359..363
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           367..369
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          370..377
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   TURN            378..381
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          386..390
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           392..401
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           403..407
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           413..426
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   TURN            427..430
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          431..433
FT                   /evidence="ECO:0007829|PDB:7K0N"
FT   HELIX           434..456
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          462..465
FT                   /evidence="ECO:0007829|PDB:7K0M"
FT   STRAND          467..472
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   HELIX           476..488
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          494..496
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   TURN            498..500
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   TURN            503..505
FT                   /evidence="ECO:0007829|PDB:6M4O"
FT   STRAND          507..511
FT                   /evidence="ECO:0007829|PDB:7K0K"
FT   STRAND          513..515
FT                   /evidence="ECO:0007829|PDB:7CQI"
FT   HELIX           518..535
FT                   /evidence="ECO:0007829|PDB:7K0K"
SQ   SEQUENCE   562 AA;  62924 MW;  0C1AA1E233DE36F1 CRC64;
     MRPEPGGCCC RRTVRANGCV ANGEVRNGYV RSSAAAAAAA AAGQIHHVTQ NGGLYKRPFN
     EAFEETPMLV AVLTYVGYGV LTLFGYLRDF LRYWRIEKCH HATEREEQKD FVSLYQDFEN
     FYTRNLYMRI RDNWNRPICS VPGARVDIME RQSHDYNWSF KYTGNIIKGV INMGSYNYLG
     FARNTGSCQE AAAKVLEEYG AGVCSTRQEI GNLDKHEELE ELVARFLGVE AAMAYGMGFA
     TNSMNIPALV GKGCLILSDE LNHASLVLGA RLSGATIRIF KHNNMQSLEK LLKDAIVYGQ
     PRTRRPWKKI LILVEGIYSM EGSIVRLPEV IALKKKYKAY LYLDEAHSIG ALGPTGRGVV
     EYFGLDPEDV DVMMGTFTKS FGASGGYIGG KKELIDYLRT HSHSAVYATS LSPPVVEQII
     TSMKCIMGQD GTSLGKECVQ QLAENTRYFR RRLKEMGFII YGNEDSPVVP LMLYMPAKIG
     AFGREMLKRN IGVVVVGFPA TPIIESRARF CLSAAHTKEI LDTALKEIDE VGDLLQLKYS
     RHRLVPLLDR PFDETTYEET ED
 
 
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