SPXM3_ORYSJ
ID SPXM3_ORYSJ Reviewed; 698 AA.
AC Q658H5; Q0DEX8;
DT 05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 78.
DE RecName: Full=SPX domain-containing membrane protein Os06g0129400;
GN OrderedLocusNames=Os06g0129400, LOC_Os06g03860;
GN ORFNames=OsJ_19983, P0538C01.18;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q658H5-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q658H5-2; Sequence=VSP_039766, VSP_039767;
CC -!- SIMILARITY: Belongs to the major facilitator superfamily.
CC {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF18595.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP000391; BAD44792.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF18595.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014962; BAS95961.1; -; Genomic_DNA.
DR EMBL; CM000143; EAZ35695.1; -; Genomic_DNA.
DR EMBL; AK243620; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015643652.1; XM_015788166.1. [Q658H5-1]
DR AlphaFoldDB; Q658H5; -.
DR STRING; 4530.OS06T0129400-01; -.
DR PaxDb; Q658H5; -.
DR PRIDE; Q658H5; -.
DR EnsemblPlants; Os06t0129400-01; Os06t0129400-01; Os06g0129400. [Q658H5-2]
DR EnsemblPlants; Os06t0129400-02; Os06t0129400-02; Os06g0129400. [Q658H5-1]
DR GeneID; 4339994; -.
DR Gramene; Os06t0129400-01; Os06t0129400-01; Os06g0129400. [Q658H5-2]
DR Gramene; Os06t0129400-02; Os06t0129400-02; Os06g0129400. [Q658H5-1]
DR KEGG; osa:4339994; -.
DR eggNOG; KOG1161; Eukaryota.
DR eggNOG; KOG2325; Eukaryota.
DR InParanoid; Q658H5; -.
DR OMA; MTNYYIV; -.
DR OrthoDB; 345163at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000007752; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0022857; F:transmembrane transporter activity; IEA:InterPro.
DR CDD; cd14479; SPX-MFS_plant; 1.
DR Gene3D; 1.20.1250.20; -; 1.
DR InterPro; IPR011701; MFS.
DR InterPro; IPR036259; MFS_trans_sf.
DR InterPro; IPR004331; SPX_dom.
DR InterPro; IPR045264; SPXM_SPX_plant.
DR Pfam; PF07690; MFS_1; 1.
DR Pfam; PF03105; SPX; 2.
DR SUPFAM; SSF103473; SSF103473; 1.
DR PROSITE; PS51382; SPX; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..698
FT /note="SPX domain-containing membrane protein Os06g0129400"
FT /id="PRO_0000398575"
FT TRANSMEM 248..268
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 279..299
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 316..336
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 339..357
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 376..396
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 412..432
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 514..534
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 545..565
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 577..597
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 605..625
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 671..691
FT /note="Helical"
FT /evidence="ECO:0000255"
FT DOMAIN 2..145
FT /note="SPX"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00714"
FT REGION 467..495
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 512..557
FT /note="VQLLIYFMLKYAMEILLSESSVITNHYFNWNTSAVAIFLAILGLTV -> QH
FT VRGQATPDGVSNHTAGRHYFQLQNHEHILGCPVCRLSTGHICVC (in isoform
FT 2)"
FT /evidence="ECO:0000303|Ref.5"
FT /id="VSP_039766"
FT VAR_SEQ 558..698
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|Ref.5"
FT /id="VSP_039767"
SQ SEQUENCE 698 AA; 77650 MW; FF082AB186330B32 CRC64;
MVNFGKKLMA DQIPEWKGYY INYKLMKKKV KQYGQQVQQG EKDRRRVLKD FSKMLDDQIE
KIVLFLLEQQ GALASRIEKL GKQRAILAEQ PDISAIAELR EAYREVGLDL IKLLKFVDLN
ATGIRKILKK FDKRFGYRFT DYYVTSRSNH PYSQLQQVFK HVGVGAVVGA LSRNLADLQE
RQGSYLSIYD QPSTALKDPI IDMINSSVDK LTRSTNFLRF LGQHALIVGE ESPSTAEEEE
IEDQKYHFMS LMLNLVNTFL YMVNTYIIVP TADDYSVSLG AASTVCGVVI GSMAVAQIFS
SVYFSAWSNK SYFRPLIFSS IVLFLGNVCY AMAYDMKSLT VLIIGRLLCG MGSARAVNRR
YISDCVPARI RMQASAGFVS ASALGMACGP ALAGLLQWKF KIYMVTFNQS TLPGWVMAVA
WLLYLVWLWI SFKEPNRATE VNGTQQNPAS VQRADIEQLE NGLAQPLLRD SSKKDEDDDE
EVDDSEEGTH DSRKPATSIG SAYRLLTPSV KVQLLIYFML KYAMEILLSE SSVITNHYFN
WNTSAVAIFL AILGLTVLPV NAVVGTYISN MFEDRQLLMV SQITLLVGII FSFKITSTYS
VVQYVVSALV TFVSAEVLEG VNLSLLSSVM SSRLSRGTYN GGLLSTEAGT LARVVADCTI
TAAGYLGIGK LLNVTLLPSL VICAASIAST FLTYNSLF
