STKLJ_ARATH
ID STKLJ_ARATH Reviewed; 456 AA.
AC Q9CAV7; F4J625; Q8VYQ3;
DT 07-SEP-2016, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 25-MAY-2022, entry version 118.
DE RecName: Full=Probable transcription factor At3g04930 {ECO:0000305};
DE AltName: Full=Storekeeper-like protein At3g04930 {ECO:0000305};
GN OrderedLocusNames=At3g04930 {ECO:0000312|Araport:AT3G04930};
GN ORFNames=T9J14.12 {ECO:0000312|EMBL:AAG51410.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N., Takiguchi Y.,
RA Takagi M.;
RT "ORF cloning and analysis of Arabidopsis transcription factor genes.";
RL Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP GENE FAMILY.
RX PubMed=12535344; DOI=10.1046/j.1365-313x.2003.01622.x;
RA Curaba J., Herzog M., Vachon G.;
RT "GeBP, the first member of a new gene family in Arabidopsis, encodes a
RT nuclear protein with DNA-binding activity and is regulated by KNAT1.";
RL Plant J. 33:305-317(2003).
CC -!- INTERACTION:
CC Q9CAV7; F4K5T4: At5g28040; NbExp=4; IntAct=EBI-15198431, EBI-15193831;
CC Q9CAV7; Q5XEN5: MBD1; NbExp=3; IntAct=EBI-15198431, EBI-4445335;
CC Q9CAV7; Q8LA53: MBD2; NbExp=5; IntAct=EBI-15198431, EBI-4425826;
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=3;
CC Name=1;
CC IsoId=Q9CAV7-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9CAV7-2; Sequence=VSP_058468, VSP_058471;
CC Name=3;
CC IsoId=Q9CAV7-3; Sequence=VSP_058469, VSP_058470;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to the presence of a micro
CC intron. {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the GeBP family. {ECO:0000305}.
CC -!- WEB RESOURCE: Name=Plant Transcription Factor Database;
CC URL="http://planttfdb.cbi.pku.edu.cn/family.php?sp=Ath&fam=GeBP#family_intro";
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DR EMBL; AC009465; AAG51410.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE74159.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE74160.1; -; Genomic_DNA.
DR EMBL; AY070136; AAL47486.1; -; mRNA.
DR EMBL; AY079045; AAL79595.1; -; mRNA.
DR EMBL; AB493601; BAH30439.1; -; mRNA.
DR RefSeq; NP_001189809.1; NM_001202880.1. [Q9CAV7-3]
DR RefSeq; NP_187144.1; NM_111365.5. [Q9CAV7-1]
DR AlphaFoldDB; Q9CAV7; -.
DR SMR; Q9CAV7; -.
DR IntAct; Q9CAV7; 5.
DR STRING; 3702.AT3G04930.1; -.
DR iPTMnet; Q9CAV7; -.
DR PaxDb; Q9CAV7; -.
DR PRIDE; Q9CAV7; -.
DR ProteomicsDB; 228302; -. [Q9CAV7-1]
DR EnsemblPlants; AT3G04930.1; AT3G04930.1; AT3G04930. [Q9CAV7-1]
DR EnsemblPlants; AT3G04930.2; AT3G04930.2; AT3G04930. [Q9CAV7-3]
DR GeneID; 819653; -.
DR Gramene; AT3G04930.1; AT3G04930.1; AT3G04930. [Q9CAV7-1]
DR Gramene; AT3G04930.2; AT3G04930.2; AT3G04930. [Q9CAV7-3]
DR KEGG; ath:AT3G04930; -.
DR Araport; AT3G04930; -.
DR TAIR; locus:2114815; AT3G04930.
DR eggNOG; ENOG502QUAW; Eukaryota.
DR HOGENOM; CLU_032856_0_0_1; -.
DR InParanoid; Q9CAV7; -.
DR OMA; LMASEQY; -.
DR OrthoDB; 1140192at2759; -.
DR PhylomeDB; Q9CAV7; -.
DR PRO; PR:Q9CAV7; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9CAV7; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR007592; GEBP.
DR PANTHER; PTHR31662; PTHR31662; 1.
DR Pfam; PF04504; DUF573; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; Phosphoprotein; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..456
FT /note="Probable transcription factor At3g04930"
FT /id="PRO_0000436984"
FT REGION 1..71
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 19..38
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 47..62
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 16
FT /note="Phosphoserine"
FT /evidence="ECO:0000250|UniProtKB:F4K5T4"
FT VAR_SEQ 380..416
FT /note="GGGGGGGGHGFGSLSPMFTRPFNFGFGVEGGGNKAVA -> WWWWWWWSWFW
FT LAKPHVYTAVQFRFWCRGRRKQGGCR (in isoform 2)"
FT /id="VSP_058468"
FT VAR_SEQ 388..396
FT /note="HGFGSLSPM -> GGFVYNLLY (in isoform 3)"
FT /id="VSP_058469"
FT VAR_SEQ 397..456
FT /note="Missing (in isoform 3)"
FT /id="VSP_058470"
FT VAR_SEQ 417..456
FT /note="Missing (in isoform 2)"
FT /id="VSP_058471"
SQ SEQUENCE 456 AA; 49707 MW; 5C5AB0154DA9AC3C CRC64;
MTSDHRDALF SLELESPDPD EGGVADGGES DTDEDLRDND DVVMPGTNEA EAEDDDPEEE
DLNSPSTSSL PMVSTISATA VVSGTPTATS STGAVTVALP AGSAVPVSVI PVDSDPKWHR
MTEIVHQRPP IDDSRRLFQR LWTDEDEIEL LRGFLDYMTM HRGSSSHPPD TAPFYEQIKS
KLQLDFNKNQ LVEKLRRLKK KYRNVMSKIS SGKEVFFKSP HDQSTFEISR KIWNQTGKII
GFEDNNVMDF EETNNHHNTT NGNYSTFNSP SSNPTLELDS ENGIEKKLTM SSSSVSRKRS
RSRIGKIEED NKPVITPSDG PIASNVNLNE AAAVGIGGNL GGLIEETVKN CVSPVIKEMM
NGTTSMMMAA MGGGFPGLGG GGGGGGGHGF GSLSPMFTRP FNFGFGVEGG GNKAVADERW
RKQQILELEV YSRRLELVQE QIRTTLNELK TMPSGI
