STOP1_ORYSJ
ID STOP1_ORYSJ Reviewed; 522 AA.
AC Q943I6; A0A0P0VAW2;
DT 08-MAR-2011, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 133.
DE RecName: Full=Zinc finger protein STOP1 homolog;
DE AltName: Full=Protein STOP1 homolog;
GN OrderedLocusNames=Os01g0871200, LOC_Os01g65080;
GN ORFNames=OsJ_04239, OSJNBb0008G24.8, P0039A07.24-1;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Probable transcription factor that may be involved in
CC aluminum tolerance. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
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DR EMBL; AP003235; BAB64114.1; -; Genomic_DNA.
DR EMBL; AP003566; BAB86538.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06849.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS75445.1; -; Genomic_DNA.
DR EMBL; CM000138; EEE55740.1; -; Genomic_DNA.
DR EMBL; AK072211; BAG92873.1; -; mRNA.
DR EMBL; AK100840; BAG94792.1; -; mRNA.
DR RefSeq; XP_015641300.1; XM_015785814.1.
DR RefSeq; XP_015641307.1; XM_015785821.1.
DR AlphaFoldDB; Q943I6; -.
DR STRING; 4530.OS01T0871200-03; -.
DR PaxDb; Q943I6; -.
DR PRIDE; Q943I6; -.
DR EnsemblPlants; Os01t0871200-01; Os01t0871200-01; Os01g0871200.
DR EnsemblPlants; Os01t0871200-02; Os01t0871200-02; Os01g0871200.
DR EnsemblPlants; Os01t0871200-03; Os01t0871200-03; Os01g0871200.
DR EnsemblPlants; Os01t0871200-04; Os01t0871200-04; Os01g0871200.
DR GeneID; 4324940; -.
DR Gramene; Os01t0871200-01; Os01t0871200-01; Os01g0871200.
DR Gramene; Os01t0871200-02; Os01t0871200-02; Os01g0871200.
DR Gramene; Os01t0871200-03; Os01t0871200-03; Os01g0871200.
DR Gramene; Os01t0871200-04; Os01t0871200-04; Os01g0871200.
DR KEGG; osa:4324940; -.
DR eggNOG; KOG1721; Eukaryota.
DR HOGENOM; CLU_029078_0_0_1; -.
DR InParanoid; Q943I6; -.
DR OMA; ADLTCII; -.
DR OrthoDB; 1318335at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q943I6; OS.
DR GO; GO:0005634; C:nucleus; IC:Gramene.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IC:Gramene.
DR GO; GO:0010447; P:response to acidic pH; IEA:InterPro.
DR GO; GO:0010044; P:response to aluminum ion; IEA:InterPro.
DR InterPro; IPR044300; STOP1/2.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR46352; PTHR46352; 1.
DR SMART; SM00355; ZnF_C2H2; 3.
DR SUPFAM; SSF57667; SSF57667; 1.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1.
DR PROSITE; PS50157; ZINC_FINGER_C2H2_2; 1.
PE 2: Evidence at transcript level;
KW Metal-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..522
FT /note="Zinc finger protein STOP1 homolog"
FT /id="PRO_0000405574"
FT ZN_FING 282..304
FT /note="C2H2-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT ZN_FING 390..421
FT /note="C2H2-type 2; atypical"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00042"
FT REGION 1..43
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 234..260
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..38
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 241..258
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 522 AA; 57147 MW; F70BE4EDFFCEAFF8 CRC64;
MDSGLGRSSE TSLKALPSMA SNATRNTDPD QQGVRFSSMD QPPCFARPGQ SFPAFPPLFG
VQSSSLYLPD DIEAKIGNQF ESNPSPNNPT MDWDPQAMLS NLSFLEQKIK QVKDIVQSMS
NRESQVAGGS SEAQAKQQLV TADLTCIIIQ LISTAGSLLP SMKNPISSNP ALRHLSNTLC
APMILGTNCN LRPSANDEAT IPDISKTHDY EELMNSLNTT QAESDEMMNC QNPCGGEGSE
PIPMEDHDVK ESDDGGEREN LPPGSYVVLQ LEKEEILAPH THFCLICGKG FKRDANLRMH
MRGHGDEYKT AAALAKPSKD SSLESAPVTR YSCPYVGCKR NKEHKKFQPL KTILCVKNHY
KRSHCDKSYT CSRCNTKKFS VIADLKTHEK HCGRDKWLCS CGTTFSRKDK LFGHVALFQG
HTPALPMDDI KVTGASEQPQ GSEAMNTMVG SAGYNFPGSS SDDIPNLDMK MADDPRYFSP
LSFDPCFGGL DDFTRPGFDI SENPFSFLPS GSCSFGQQNG DS
