ABI4_ORYSJ
ID ABI4_ORYSJ Reviewed; 269 AA.
AC C7J2Z1; A0A0P0WL79; Q5W6G5;
DT 05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
DT 13-OCT-2009, sequence version 1.
DT 03-AUG-2022, entry version 78.
DE RecName: Full=Ethylene-responsive transcription factor ABI4;
DE AltName: Full=ERF ABI4;
DE AltName: Full=Protein ABI4 homolog;
DE Short=OsABI4;
GN Name=ABI4; Synonyms=ERF117; OrderedLocusNames=Os05g0351200, LOC_Os05g28350;
GN ORFNames=OSJNBa0077J17.14;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP SUBCELLULAR LOCATION.
RX PubMed=20049613; DOI=10.1007/s00438-009-0506-y;
RA Matsukura S., Mizoi J., Yoshida T., Todaka D., Ito Y., Maruyama K.,
RA Shinozaki K., Yamaguchi-Shinozaki K.;
RT "Comprehensive analysis of rice DREB2-type genes that encode transcription
RT factors involved in the expression of abiotic stress-responsive genes.";
RL Mol. Genet. Genomics 283:185-196(2010).
CC -!- FUNCTION: Probable transcription regulator that binds to cis-responsive
CC elements of genes involved in stress response. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00366,
CC ECO:0000269|PubMed:20049613}.
CC -!- SIMILARITY: Belongs to the AP2/ERF transcription factor family. ERF
CC subfamily. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAV44075.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC136221; AAV44075.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008211; BAH93104.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS93538.1; -; Genomic_DNA.
DR AlphaFoldDB; C7J2Z1; -.
DR SMR; C7J2Z1; -.
DR STRING; 4530.OS05T0351200-00; -.
DR PaxDb; C7J2Z1; -.
DR PRIDE; C7J2Z1; -.
DR EnsemblPlants; Os05t0351200-00; Os05t0351200-00; Os05g0351200.
DR Gramene; Os05t0351200-00; Os05t0351200-00; Os05g0351200.
DR eggNOG; ENOG502QT85; Eukaryota.
DR HOGENOM; CLU_1099874_0_0_1; -.
DR InParanoid; C7J2Z1; -.
DR OMA; EAAWGFH; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; C7J2Z1; OS.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IBA:GO_Central.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IBA:GO_Central.
DR CDD; cd00018; AP2; 1.
DR Gene3D; 3.30.730.10; -; 1.
DR InterPro; IPR001471; AP2/ERF_dom.
DR InterPro; IPR036955; AP2/ERF_dom_sf.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR Pfam; PF00847; AP2; 1.
DR PRINTS; PR00367; ETHRSPELEMNT.
DR SMART; SM00380; AP2; 1.
DR SUPFAM; SSF54171; SSF54171; 1.
DR PROSITE; PS51032; AP2_ERF; 1.
PE 3: Inferred from homology;
KW DNA-binding; Nucleus; Reference proteome; Stress response; Transcription;
KW Transcription regulation.
FT CHAIN 1..269
FT /note="Ethylene-responsive transcription factor ABI4"
FT /id="PRO_0000397872"
FT DNA_BIND 49..106
FT /note="AP2/ERF"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00366"
FT REGION 1..53
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 106..153
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 37..51
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 120..135
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 269 AA; 27627 MW; 83C12267440ED79F CRC64;
MEPSDDACTV AAPAAETAAS SSGAGGGGGG GRTKKKAAGK GGPENGKFRY RGVRQRSWGK
WVAEIREPRK RSRKWLGTFA TAEDAARAYD RAALLLYGPR AHLNLTAPPP LPPPPPSSAA
AAAASSSSAA SSTSAPPLRP LLPRPPHLHP AFHHQPFHHH LLQPQPPPPP PPLYYAATAS
TSTVTTTTTA PPPQLAAAAP AAVLVAAAVS STAETQAVVA TAPEDAASAA AAAAAEEEAA
WGFHGGDEED YAAALLWSEP DPWFDLFLK
