SWI3A_ORYSJ
ID SWI3A_ORYSJ Reviewed; 560 AA.
AC Q0JCC3; A0A0P0WBS3; Q7XK11;
DT 07-APR-2021, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=SWI/SNF complex subunit SWI3A homolog {ECO:0000305};
DE Short=OsSWI3A {ECO:0000303|PubMed:32808364};
DE AltName: Full=Transcription regulatory protein SWI3A homolog {ECO:0000305};
GN Name=SWI3A {ECO:0000303|PubMed:32808364}; Synonyms=CHB703 {ECO:0000305};
GN OrderedLocusNames=Os04g0480300 {ECO:0000312|EMBL:BAS89730.1},
GN LOC_Os04g40420 {ECO:0000305};
GN ORFNames=OSJNBa0044K18.33 {ECO:0000312|EMBL:CAE05892.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP INTERACTION WITH LFR, AND SUBCELLULAR LOCATION.
RX PubMed=32808364; DOI=10.1111/tpj.14967;
RA Qi D., Wen Q., Meng Z., Yuan S., Guo H., Zhao H., Cui S.;
RT "OsLFR is essential for early endosperm and embryo development by
RT interacting with SWI/SNF complex members in Oryza sativa.";
RL Plant J. 104:901-916(2020).
CC -!- FUNCTION: Component of a multiprotein complex equivalent of the SWI/SNF
CC complex, an ATP-dependent chromatin-remodeling complex, which is
CC required for the positive and negative regulation of gene expression of
CC a large number of genes. It changes chromatin structure by altering
CC DNA-histone contacts within a nucleosome, leading eventually to a
CC change in nucleosome position, thus facilitating or repressing binding
CC of gene-specific transcription factors. {ECO:0000250|UniProtKB:Q8W475}.
CC -!- SUBUNIT: Interacts with LFR. {ECO:0000269|PubMed:32808364}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00624,
CC ECO:0000269|PubMed:32808364}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAE05892.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL606595; CAE05892.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008210; BAF15014.1; -; Genomic_DNA.
DR EMBL; AP014960; BAS89730.1; -; Genomic_DNA.
DR EMBL; AK102453; BAG95562.1; -; mRNA.
DR AlphaFoldDB; Q0JCC3; -.
DR SMR; Q0JCC3; -.
DR STRING; 4530.OS04T0480300-01; -.
DR PaxDb; Q0JCC3; -.
DR PRIDE; Q0JCC3; -.
DR EnsemblPlants; Os04t0480300-01; Os04t0480300-01; Os04g0480300.
DR Gramene; Os04t0480300-01; Os04t0480300-01; Os04g0480300.
DR eggNOG; KOG1279; Eukaryota.
DR HOGENOM; CLU_004447_5_1_1; -.
DR InParanoid; Q0JCC3; -.
DR OMA; MFISTTY; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006325; P:chromatin organization; IEA:UniProtKB-KW.
DR CDD; cd00167; SANT; 1.
DR Gene3D; 1.10.10.10; -; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR InterPro; IPR032451; SMARCC_C.
DR InterPro; IPR007526; SWIRM.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR Pfam; PF04433; SWIRM; 1.
DR Pfam; PF16495; SWIRM-assoc_1; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; SSF46689; 2.
DR PROSITE; PS51293; SANT; 1.
DR PROSITE; PS50934; SWIRM; 1.
PE 1: Evidence at protein level;
KW Chromatin regulator; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..560
FT /note="SWI/SNF complex subunit SWI3A homolog"
FT /id="PRO_0000452396"
FT DOMAIN 24..127
FT /note="SWIRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00247"
FT DOMAIN 242..293
FT /note="SANT"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00624"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 311..352
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 414..445
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 313..334
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 427..445
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 560 AA; 62083 MW; BEFC0D64DE0EF68C CRC64;
MSPPVAGAAS SGDGPPGRPP RELYTIPASS GWFQWDEIHE TERRALPEFF GGAGGSGFGT
ASRNPRIYRE YRDYIISRYR EDTSRRLTFT EVRKALVGDV TLLRKLFAFL DSSGLINFSA
SPSRPEAQQQ QRQTEAEAVV EAPVGLQVTP RPPPSYFAEE KGGGGNENGF RLPPLTSYSD
VFGEWAPGMA PICGLCGMEC RDGNAQILKD GFKVCSKCYA NNDNKGEANI HPGDKKERID
NHSSSAWTDA ETLLLLEGVL KHGDDWDLIA QHVRTKNKSE CIARLIQLPF GEHMLGTVNG
KLDNRLHKIQ TTDGKVNKST VKESSSQPTE TVDDMQIDGN EDGADKSVEE HPTKHRRLFS
SIDITVSLME QLAHLTTSTS PDVVAAAADA AIKALGNENP QARRAFQLSE KEYQTRAFSS
NHARQSDDVG GGDRDVEMHG HPDKKQGKMF ISTTYQVRAA VATSIGVAAA RAKMLADQEE
REMELLMASI IETQLKKIQY KIKHFEELEL IMDQEYATLQ QMKSSLVDEW QKVLKRAFET
GVPISRDEVL IKLFQNKPNL
