SWI3C_ORYSJ
ID SWI3C_ORYSJ Reviewed; 784 AA.
AC Q53KK6; B9G9R2; Q0IU59;
DT 07-APR-2021, integrated into UniProtKB/Swiss-Prot.
DT 24-MAY-2005, sequence version 1.
DT 03-AUG-2022, entry version 151.
DE RecName: Full=SWI/SNF complex subunit SWI3C homolog {ECO:0000305};
DE Short=OsSWI3C {ECO:0000303|PubMed:32129897};
DE AltName: Full=OsSWI3C1 {ECO:0000303|PubMed:32808364};
DE AltName: Full=Transcription regulatory protein SWI3C homolog {ECO:0000305};
GN Name=SWI3C {ECO:0000303|PubMed:32129897};
GN Synonyms=CHB705 {ECO:0000305}, SWI3C1 {ECO:0000303|PubMed:32808364};
GN OrderedLocusNames=Os11g0183700 {ECO:0000312|EMBL:BAT12964.1},
GN LOC_Os11g08080 {ECO:0000312|EMBL:ABA91812.1};
GN ORFNames=OsJ_33208 {ECO:0000312|EMBL:EEE51768.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP INTERACTION WITH LFR, AND SUBCELLULAR LOCATION.
RX PubMed=32808364; DOI=10.1111/tpj.14967;
RA Qi D., Wen Q., Meng Z., Yuan S., Guo H., Zhao H., Cui S.;
RT "OsLFR is essential for early endosperm and embryo development by
RT interacting with SWI/SNF complex members in Oryza sativa.";
RL Plant J. 104:901-916(2020).
RN [8]
RP FUNCTION, INTERACTION WITH NMCP1, AND SUBCELLULAR LOCATION.
RX PubMed=32129897; DOI=10.1111/nph.16518;
RA Yang J., Chang Y., Qin Y., Chen D., Zhu T., Peng K., Wang H., Tang N.,
RA Li X., Wang Y., Liu Y., Li X., Xie W., Xiong L.;
RT "A lamin-like protein OsNMCP1 regulates drought resistance and root growth
RT through chromatin accessibility modulation by interacting with a chromatin
RT remodeller OsSWI3C in rice.";
RL New Phytol. 227:65-83(2020).
CC -!- FUNCTION: Component of a multiprotein complex equivalent of the SWI/SNF
CC complex, an ATP-dependent chromatin-remodeling complex, which is
CC required for the positive and negative regulation of gene expression of
CC a large number of genes. It changes chromatin structure by altering
CC DNA-histone contacts within a nucleosome, leading eventually to a
CC change in nucleosome position, thus facilitating or repressing binding
CC of gene-specific transcription factors (By similarity). May be involved
CC in positive response to drought stress and modulation of root growth
CC through its interaction with NMCP1 (PubMed:32129897).
CC {ECO:0000250|UniProtKB:Q9XI07, ECO:0000269|PubMed:32129897}.
CC -!- SUBUNIT: Interacts with LFR (PubMed:32808364). Interacts with NMCP1
CC (PubMed:32129897). {ECO:0000269|PubMed:32129897,
CC ECO:0000269|PubMed:32808364}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00624,
CC ECO:0000269|PubMed:32129897, ECO:0000269|PubMed:32808364}. Nucleus,
CC nucleoplasm {ECO:0000269|PubMed:32129897}.
CC -!- MISCELLANEOUS: Plants overexpressing SWIC3 are hypersensitive to
CC drought stress. {ECO:0000269|PubMed:32129897}.
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DR EMBL; AC146328; AAX95027.1; -; Genomic_DNA.
DR EMBL; DP000010; ABA91812.1; -; Genomic_DNA.
DR EMBL; AP008217; BAF27756.1; -; Genomic_DNA.
DR EMBL; AP014967; BAT12964.1; -; Genomic_DNA.
DR EMBL; CM000148; EEE51768.1; -; Genomic_DNA.
DR EMBL; AK066941; BAG90191.1; -; mRNA.
DR RefSeq; XP_015617508.1; XM_015762022.1.
DR AlphaFoldDB; Q53KK6; -.
DR STRING; 4530.OS11T0183700-01; -.
DR PaxDb; Q53KK6; -.
DR PRIDE; Q53KK6; -.
DR EnsemblPlants; Os11t0183700-01; Os11t0183700-01; Os11g0183700.
DR GeneID; 4349954; -.
DR Gramene; Os11t0183700-01; Os11t0183700-01; Os11g0183700.
DR KEGG; osa:4349954; -.
DR eggNOG; KOG1279; Eukaryota.
DR HOGENOM; CLU_004447_4_1_1; -.
DR InParanoid; Q53KK6; -.
DR OMA; CEQVERI; -.
DR OrthoDB; 683891at2759; -.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000007752; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR ExpressionAtlas; Q53KK6; baseline and differential.
DR GO; GO:0005654; C:nucleoplasm; IDA:UniProtKB.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006325; P:chromatin organization; IEA:UniProtKB-KW.
DR GO; GO:2000070; P:regulation of response to water deprivation; IMP:UniProtKB.
DR CDD; cd00167; SANT; 1.
DR Gene3D; 1.10.10.10; -; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR017884; SANT_dom.
DR InterPro; IPR032451; SMARCC_C.
DR InterPro; IPR007526; SWIRM.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR Pfam; PF04433; SWIRM; 1.
DR Pfam; PF16495; SWIRM-assoc_1; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; SSF46689; 2.
DR PROSITE; PS51293; SANT; 1.
DR PROSITE; PS50934; SWIRM; 1.
DR PROSITE; PS50135; ZF_ZZ_2; 1.
PE 1: Evidence at protein level;
KW Chromatin regulator; DNA-binding; Metal-binding; Nucleus;
KW Reference proteome; Stress response; Transcription;
KW Transcription regulation; Zinc; Zinc-finger.
FT CHAIN 1..784
FT /note="SWI/SNF complex subunit SWI3C homolog"
FT /id="PRO_0000452397"
FT DOMAIN 185..284
FT /note="SWIRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00247"
FT DOMAIN 413..464
FT /note="SANT"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00624"
FT ZN_FING 355..409
FT /note="ZZ-type; degenerate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT REGION 1..68
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 667..702
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 760..784
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 22..36
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 47..68
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 667..690
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 360
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT BINDING 363
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT BINDING 383
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT BINDING 386
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00228"
FT CONFLICT 40
FT /note="D -> E (in Ref. 5; EEE51768)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 784 AA; 85063 MW; CDDF951DA54FC0E2 CRC64;
MPRKASSTSD SRLKWRKWKR NPTASPSPSN RSSAAAAAAD HSDDSDSAAV NEDDDSAVPE
DADDETLAGA EDPVLDLREA EVLPSAEPVS AFPVATRRVV NRPHPSVLAV IAAERSACAG
EGSAAVAAAP VLENISYGQQ QVLSGVLPDH ASLATDTDKP STYVCTPPNL MEGHGVTKQF
QGRLHVVPKH SDWFSPGIVH RLERQVVPQF FSGKSPGNTP EKYMLLRNKV IAKYLENPSK
RLAFAECQGL VANTAELYDL SRIVRFLDTW GIINYLASGS VHRGLRMATS LLREEPTGEL
QLLTAPLKSI DGLILFDRPK CNLQAEDISS LASNSEVVDF DAGLAELDGK IRERLSESSC
SYCLQPLTSL HYQSLKEADI ALCSDCFHDA RYITGHSSLD FQRIDGDNDR SENDGDSWTD
QETLLLLEGI EKYNDNWNNI AEHVGTKSKA QCIYHFIRLP VEDGLLENIE VPDASVPFRA
ETNGYPHLDC NGSTSGNLPQ KIPPDNQLPF INSSNPVMSL VGFLASAMGP RVAASCASAA
LSVLTVDDDS RVNSEGICSD SRGQGPHPNF RDHNGGVSSS ISPEKVKHAA MCGLSAAATK
AKLFADQEER EIQRLTATVI NHQLKRLELK LKQFAEVETL LLKECEQVER IRQRIASDRV
RIVSTRLASP GNSLPGGSTS TMSSNPMSMS PRPMGVPGSM PQSSMPAPFA NNMQGHGHPQ
MAFLQQQQRQ QMLSFGPRLP LSAIQTQPSP QTSNIMFNPG MPNSVTPNHH QLLRSSSGNN
SSVG
