SYA_ACIFI
ID SYA_ACIFI Reviewed; 877 AA.
AC Q56273;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1997, sequence version 1.
DT 03-AUG-2022, entry version 101.
DE RecName: Full=Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00036};
DE EC=6.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00036};
DE AltName: Full=Alanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00036};
DE Short=AlaRS {ECO:0000255|HAMAP-Rule:MF_00036};
GN Name=alaS {ECO:0000255|HAMAP-Rule:MF_00036};
OS Acidithiobacillus ferridurans.
OC Bacteria; Proteobacteria; Acidithiobacillia; Acidithiobacillales;
OC Acidithiobacillaceae; Acidithiobacillus.
OX NCBI_TaxID=1232575;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=ATCC 33020 / DSM 29468 / JCM 18981 / 11Fe;
RX PubMed=9245807; DOI=10.1099/00221287-143-7-2179;
RA Guiliani N., Bengrine A., Borne F., Chippaux M., Bonnefoy V.;
RT "Alanyl-tRNA synthetase gene of the extreme acidophilic
RT chemolithoautotrophic Thiobacillus ferrooxidans is highly homologous to
RT alaS genes from all living kingdoms but cannot be transcribed from its
RT promoter in Escherichia coli.";
RL Microbiology 143:2179-2187(1997).
CC -!- FUNCTION: Catalyzes the attachment of alanine to tRNA(Ala) in a two-
CC step reaction: alanine is first activated by ATP to form Ala-AMP and
CC then transferred to the acceptor end of tRNA(Ala). Also edits
CC incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing
CC domain. {ECO:0000255|HAMAP-Rule:MF_00036}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-
CC tRNA(Ala); Xref=Rhea:RHEA:12540, Rhea:RHEA-COMP:9657, Rhea:RHEA-
CC COMP:9923, ChEBI:CHEBI:30616, ChEBI:CHEBI:33019, ChEBI:CHEBI:57972,
CC ChEBI:CHEBI:78442, ChEBI:CHEBI:78497, ChEBI:CHEBI:456215; EC=6.1.1.7;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_00036};
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_00036};
CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP-Rule:MF_00036};
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00036}.
CC -!- DOMAIN: Consists of three domains; the N-terminal catalytic domain, the
CC editing domain and the C-terminal C-Ala domain. The editing domain
CC removes incorrectly charged amino acids, while the C-Ala domain, along
CC with tRNA(Ala), serves as a bridge to cooperatively bring together the
CC editing and aminoacylation centers thus stimulating deacylation of
CC misacylated tRNAs. {ECO:0000255|HAMAP-Rule:MF_00036}.
CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase family.
CC {ECO:0000255|HAMAP-Rule:MF_00036}.
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DR EMBL; X95571; CAA64818.1; -; Genomic_DNA.
DR AlphaFoldDB; Q56273; -.
DR SMR; Q56273; -.
DR STRING; 380394.Lferr_1052; -.
DR PRIDE; Q56273; -.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0004813; F:alanine-tRNA ligase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006419; P:alanyl-tRNA aminoacylation; IEA:UniProtKB-UniRule.
DR Gene3D; 3.30.930.10; -; 1.
DR HAMAP; MF_00036_B; Ala_tRNA_synth_B; 1.
DR InterPro; IPR045864; aa-tRNA-synth_II/BPL/LPL.
DR InterPro; IPR002318; Ala-tRNA-lgiase_IIc.
DR InterPro; IPR018162; Ala-tRNA-ligase_IIc_anticod-bd.
DR InterPro; IPR018165; Ala-tRNA-synth_IIc_core.
DR InterPro; IPR018164; Ala-tRNA-synth_IIc_N.
DR InterPro; IPR023033; Ala_tRNA_ligase_euk/bac.
DR InterPro; IPR003156; DHHA1_dom.
DR InterPro; IPR018163; Thr/Ala-tRNA-synth_IIc_edit.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR InterPro; IPR012947; tRNA_SAD.
DR Pfam; PF02272; DHHA1; 1.
DR Pfam; PF01411; tRNA-synt_2c; 1.
DR Pfam; PF07973; tRNA_SAD; 1.
DR PRINTS; PR00980; TRNASYNTHALA.
DR SMART; SM00863; tRNA_SAD; 1.
DR SUPFAM; SSF101353; SSF101353; 1.
DR SUPFAM; SSF50447; SSF50447; 1.
DR SUPFAM; SSF55186; SSF55186; 1.
DR SUPFAM; SSF55681; SSF55681; 1.
DR TIGRFAMs; TIGR00344; alaS; 1.
DR PROSITE; PS50860; AA_TRNA_LIGASE_II_ALA; 1.
PE 3: Inferred from homology;
KW Aminoacyl-tRNA synthetase; ATP-binding; Cytoplasm; Ligase; Metal-binding;
KW Nucleotide-binding; Protein biosynthesis; RNA-binding; tRNA-binding; Zinc.
FT CHAIN 1..877
FT /note="Alanine--tRNA ligase"
FT /id="PRO_0000075235"
FT BINDING 565
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00036"
FT BINDING 569
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00036"
FT BINDING 667
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00036"
FT BINDING 671
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00036"
SQ SEQUENCE 877 AA; 95367 MW; E693592D08877E9F CRC64;
MQAQAIRQAF LEYFVEQGHQ IVPSSPLIPR NDPTLLFTNA GMVPFKDVFL GLETRPYRRA
VSSQRCMRAG GKHNDLENVG YTARHHTFFE MLGNFSFGDY FKREVIGFAW RFLTERLGLP
PEKLWITVYE EDDEAADIWM NEIGVDPARL SRCGEKDNFW SMGDTGPCGP CSEIFYDHGP
HIPGGPPGSP EEDGDRYIEI WNLVFMQFDR DSSGTLTPLP KPSVDTGMGL ERLAAVLQGV
HNNYDTDLFK PLIAAAAAIS GKTYGSDAAT DISLRVLADH IRACSFLITD GVLPANEGRG
YVLRRIIRRA VRHGRKLGME TVFFHQLVAP LVAEMGSAFP ELTRAQREVE RALEREETRF
RETLERGLSL LEEAIADLAA GAAIPGEIIF RLADTFGFPV DLTADIARER DLIMDMEGYE
AAMADERSPL PCRLGGSGEV KTERVYHDLA MRLPVTEFTG YSTCADEGKV VALIRDGEEV
AFLEAGDMGV VILDRTPFYG ESGGQAGDRG ELQSNDALFA VTDTQKPMGH LHVHLGRVES
GRLQIGDMVV ASVDEVARRA TAAHHSATHL LHAALRNILG SHVQQKGSLV NPERLRFDFS
HPEPVTAAQL REIERVVNAA IRNNVGAETR ILPVAEAQAL GAMALFGEKY GDEVRVVRMG
DFSMELCGGT HVEALGDIGV FKILSESGVA AGIRRIEAVT GAVALEAIQR DEERLQAAAG
LLKVAPAELD QRLAQTLERL RQLEKELEKV KRDEAVRAGA GLAAEAEDVG GVPVLIRRLE
GMDGKALRDA LDRLRSQLPD GVIVLAGVER EKVALIAGVG KGLTGRVHAG ELVNTVAQPL
GGKGGGRPEL AQAGAGNPAA LDAALNAARD WVKGKLG
