SYA_SYNR3
ID SYA_SYNR3 Reviewed; 882 AA.
AC A5GWM4;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 02-SEP-2008, sequence version 2.
DT 03-AUG-2022, entry version 79.
DE RecName: Full=Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00036};
DE EC=6.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00036};
DE AltName: Full=Alanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00036};
DE Short=AlaRS {ECO:0000255|HAMAP-Rule:MF_00036};
GN Name=alaS {ECO:0000255|HAMAP-Rule:MF_00036};
GN OrderedLocusNames=SynRCC307_2380;
OS Synechococcus sp. (strain RCC307).
OC Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus;
OC unclassified Synechococcus.
OX NCBI_TaxID=316278;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=RCC307;
RG Genoscope;
RL Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Catalyzes the attachment of alanine to tRNA(Ala) in a two-
CC step reaction: alanine is first activated by ATP to form Ala-AMP and
CC then transferred to the acceptor end of tRNA(Ala). Also edits
CC incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing
CC domain. {ECO:0000255|HAMAP-Rule:MF_00036}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-
CC tRNA(Ala); Xref=Rhea:RHEA:12540, Rhea:RHEA-COMP:9657, Rhea:RHEA-
CC COMP:9923, ChEBI:CHEBI:30616, ChEBI:CHEBI:33019, ChEBI:CHEBI:57972,
CC ChEBI:CHEBI:78442, ChEBI:CHEBI:78497, ChEBI:CHEBI:456215; EC=6.1.1.7;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_00036};
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_00036};
CC Note=Binds 1 zinc ion per subunit. {ECO:0000255|HAMAP-Rule:MF_00036};
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00036}.
CC -!- DOMAIN: Consists of three domains; the N-terminal catalytic domain, the
CC editing domain and the C-terminal C-Ala domain. The editing domain
CC removes incorrectly charged amino acids, while the C-Ala domain, along
CC with tRNA(Ala), serves as a bridge to cooperatively bring together the
CC editing and aminoacylation centers thus stimulating deacylation of
CC misacylated tRNAs. {ECO:0000255|HAMAP-Rule:MF_00036}.
CC -!- SIMILARITY: Belongs to the class-II aminoacyl-tRNA synthetase family.
CC {ECO:0000255|HAMAP-Rule:MF_00036}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAK29283.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; CT978603; CAK29283.1; ALT_INIT; Genomic_DNA.
DR RefSeq; WP_043738449.1; NC_009482.1.
DR AlphaFoldDB; A5GWM4; -.
DR SMR; A5GWM4; -.
DR STRING; 316278.SynRCC307_2380; -.
DR EnsemblBacteria; CAK29283; CAK29283; SynRCC307_2380.
DR KEGG; syr:SynRCC307_2380; -.
DR eggNOG; COG0013; Bacteria.
DR HOGENOM; CLU_004485_1_0_3; -.
DR OrthoDB; 91428at2; -.
DR Proteomes; UP000001115; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0004813; F:alanine-tRNA ligase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006419; P:alanyl-tRNA aminoacylation; IEA:UniProtKB-UniRule.
DR Gene3D; 3.30.930.10; -; 1.
DR HAMAP; MF_00036_B; Ala_tRNA_synth_B; 1.
DR InterPro; IPR045864; aa-tRNA-synth_II/BPL/LPL.
DR InterPro; IPR002318; Ala-tRNA-lgiase_IIc.
DR InterPro; IPR018162; Ala-tRNA-ligase_IIc_anticod-bd.
DR InterPro; IPR018165; Ala-tRNA-synth_IIc_core.
DR InterPro; IPR018164; Ala-tRNA-synth_IIc_N.
DR InterPro; IPR023033; Ala_tRNA_ligase_euk/bac.
DR InterPro; IPR003156; DHHA1_dom.
DR InterPro; IPR018163; Thr/Ala-tRNA-synth_IIc_edit.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR InterPro; IPR012947; tRNA_SAD.
DR Pfam; PF02272; DHHA1; 1.
DR Pfam; PF01411; tRNA-synt_2c; 1.
DR Pfam; PF07973; tRNA_SAD; 1.
DR PRINTS; PR00980; TRNASYNTHALA.
DR SMART; SM00863; tRNA_SAD; 1.
DR SUPFAM; SSF101353; SSF101353; 1.
DR SUPFAM; SSF50447; SSF50447; 1.
DR SUPFAM; SSF55186; SSF55186; 1.
DR SUPFAM; SSF55681; SSF55681; 1.
DR TIGRFAMs; TIGR00344; alaS; 1.
DR PROSITE; PS50860; AA_TRNA_LIGASE_II_ALA; 1.
PE 3: Inferred from homology;
KW Aminoacyl-tRNA synthetase; ATP-binding; Cytoplasm; Ligase; Metal-binding;
KW Nucleotide-binding; Protein biosynthesis; Reference proteome; RNA-binding;
KW tRNA-binding; Zinc.
FT CHAIN 1..882
FT /note="Alanine--tRNA ligase"
FT /id="PRO_0000347842"
FT BINDING 563
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00036"
FT BINDING 567
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00036"
FT BINDING 665
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00036"
FT BINDING 669
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00036"
SQ SEQUENCE 882 AA; 94418 MW; DA206FEE380D5233 CRC64;
MAPAVARPRR GAEIRAAFLE FYESRGHQPI PSASLIPVDP TVLLTIAGML PFKPVFLGQQ
ERPAPRATSS QKCIRTNDIE NVGRTARHHT FFEMLGNFSF GDYFKQQAIE WAWELSTEVF
GLDPKNLVVS VFREDDEAEA IWRDVVGVNP KRIIRMDEAD NFWASGPTGP CGPCSEIYYD
FKPALGDEDI DLEDDSRFIE FYNLVFMQYS RDAEGTLTPL ANKNIDTGLG LERMAQILQG
VPNNYETDLI YPLIETAAGL AGVDYRQLDV KGQTSLKVIG DHSRAVTQLI CDGVTASNLG
RGYILRRLLR RVVRHGRLLG ISKPFLVAMG EAAIALMQAA YPQLNERREL ILAELQREEA
RFLETLERGE KLLADVLAAK PKQISGEQAF ELYDTYGFPL ELTEEIAEEH GLSVDLAGFE
AAMEAQRQRA KAAAVSIDLT LQGAIEQMAA DLEATAFRGY EALEHPSCVV ALVVNGEPAQ
TASAGDAVQL VLDSTPFYGE GGGQVGDRGS LNGQDLIVSI ESVNRQRDVS VHHGTIERGQ
LSVGDLVTAQ VDPTCRRRAQ AHHTATHLLQ AALKQVVDSS ISQAGSLVDF DRLRFDFHCP
RAVTPAELEQ LEALINGWIT EAHSLEVQEM AIEAAKAAGA VAMFGEKYAD VVRVVDVPGV
SMELCGGTHV ANTAEIGLFK IVSEAGVASG IRRIEAVAGP AVLAYLNERD VVVKQLSERF
KVQPAEITAR VAGLQEELKG ATKALAAARS ELAVAKAAAL AAQAEAIGEH QLLVARLDGV
DGGGLQSAAQ GLADQLGDGA AVVLGGLPDP SDLGKVILVA AFGKAVVAKG QKAGQFIGGV
AKLCGGGGGG RPNLAQAGGR DGAALDGALE QAKSSLQQEL QG
