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SYFB_HELPY
ID   SYFB_HELPY              Reviewed;         764 AA.
AC   P56145;
DT   01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT   01-NOV-1997, sequence version 1.
DT   03-AUG-2022, entry version 136.
DE   RecName: Full=Phenylalanine--tRNA ligase beta subunit;
DE            EC=6.1.1.20;
DE   AltName: Full=Phenylalanyl-tRNA synthetase beta subunit;
DE            Short=PheRS;
GN   Name=pheT; OrderedLocusNames=HP_0402;
OS   Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori).
OC   Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
OC   Helicobacteraceae; Helicobacter.
OX   NCBI_TaxID=85962;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 700392 / 26695;
RX   PubMed=9252185; DOI=10.1038/41483;
RA   Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G.,
RA   Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., Dougherty B.A.,
RA   Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., Peterson S.N.,
RA   Loftus B.J., Richardson D.L., Dodson R.J., Khalak H.G., Glodek A.,
RA   McKenney K., FitzGerald L.M., Lee N., Adams M.D., Hickey E.K., Berg D.E.,
RA   Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., Cotton M.D.,
RA   Weidman J.F., Fujii C., Bowman C., Watthey L., Wallin E., Hayes W.S.,
RA   Borodovsky M., Karp P.D., Smith H.O., Fraser C.M., Venter J.C.;
RT   "The complete genome sequence of the gastric pathogen Helicobacter
RT   pylori.";
RL   Nature 388:539-547(1997).
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + H(+) +
CC         L-phenylalanyl-tRNA(Phe); Xref=Rhea:RHEA:19413, Rhea:RHEA-COMP:9668,
CC         Rhea:RHEA-COMP:9699, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:33019, ChEBI:CHEBI:58095, ChEBI:CHEBI:78442,
CC         ChEBI:CHEBI:78531, ChEBI:CHEBI:456215; EC=6.1.1.20;
CC   -!- COFACTOR:
CC       Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000250};
CC       Note=Binds 2 magnesium ions per tetramer. {ECO:0000250};
CC   -!- SUBUNIT: Tetramer of two alpha and two beta subunits. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}.
CC   -!- SIMILARITY: Belongs to the phenylalanyl-tRNA synthetase beta subunit
CC       family. Type 1 subfamily. {ECO:0000305}.
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DR   EMBL; AE000511; AAD07471.1; -; Genomic_DNA.
DR   PIR; B64570; B64570.
DR   RefSeq; NP_207200.1; NC_000915.1.
DR   RefSeq; WP_000777286.1; NC_018939.1.
DR   AlphaFoldDB; P56145; -.
DR   SMR; P56145; -.
DR   DIP; DIP-3416N; -.
DR   IntAct; P56145; 7.
DR   MINT; P56145; -.
DR   STRING; 85962.C694_02040; -.
DR   PaxDb; P56145; -.
DR   EnsemblBacteria; AAD07471; AAD07471; HP_0402.
DR   KEGG; hpy:HP_0402; -.
DR   PATRIC; fig|85962.47.peg.426; -.
DR   eggNOG; COG0072; Bacteria.
DR   eggNOG; COG0073; Bacteria.
DR   OMA; ISYNWLK; -.
DR   PhylomeDB; P56145; -.
DR   Proteomes; UP000000429; Chromosome.
DR   GO; GO:0009328; C:phenylalanine-tRNA ligase complex; IBA:GO_Central.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0004826; F:phenylalanine-tRNA ligase activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0006432; P:phenylalanyl-tRNA aminoacylation; IBA:GO_Central.
DR   CDD; cd00769; PheRS_beta_core; 1.
DR   CDD; cd02796; tRNA_bind_bactPheRS; 1.
DR   Gene3D; 2.40.50.140; -; 1.
DR   Gene3D; 3.30.70.380; -; 1.
DR   Gene3D; 3.30.930.10; -; 1.
DR   HAMAP; MF_00283; Phe_tRNA_synth_beta1; 1.
DR   InterPro; IPR045864; aa-tRNA-synth_II/BPL/LPL.
DR   InterPro; IPR009061; DNA-bd_dom_put_sf.
DR   InterPro; IPR005121; Fdx_antiC-bd.
DR   InterPro; IPR036690; Fdx_antiC-bd_sf.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR045060; Phe-tRNA-ligase_IIc_bsu.
DR   InterPro; IPR004532; Phe-tRNA-ligase_IIc_bsu_bact.
DR   InterPro; IPR041616; PheRS_beta_core.
DR   InterPro; IPR002547; tRNA-bd_dom.
DR   InterPro; IPR033714; tRNA_bind_bactPheRS.
DR   InterPro; IPR005147; tRNA_synthase_B5-dom.
DR   PANTHER; PTHR10947; PTHR10947; 2.
DR   Pfam; PF03484; B5; 1.
DR   Pfam; PF03147; FDX-ACB; 1.
DR   Pfam; PF01588; tRNA_bind; 1.
DR   Pfam; PF17759; tRNA_synthFbeta; 1.
DR   SMART; SM00874; B5; 1.
DR   SMART; SM00896; FDX-ACB; 1.
DR   SUPFAM; SSF46955; SSF46955; 1.
DR   SUPFAM; SSF50249; SSF50249; 1.
DR   SUPFAM; SSF54991; SSF54991; 1.
DR   SUPFAM; SSF55681; SSF55681; 1.
DR   TIGRFAMs; TIGR00472; pheT_bact; 1.
DR   PROSITE; PS51483; B5; 1.
DR   PROSITE; PS51447; FDX_ACB; 1.
DR   PROSITE; PS50886; TRBD; 1.
PE   3: Inferred from homology;
KW   Aminoacyl-tRNA synthetase; ATP-binding; Cytoplasm; Ligase; Magnesium;
KW   Metal-binding; Nucleotide-binding; Protein biosynthesis;
KW   Reference proteome; RNA-binding; tRNA-binding.
FT   CHAIN           1..764
FT                   /note="Phenylalanine--tRNA ligase beta subunit"
FT                   /id="PRO_0000126893"
FT   DOMAIN          38..148
FT                   /note="tRNA-binding"
FT   DOMAIN          375..455
FT                   /note="B5"
FT   DOMAIN          673..763
FT                   /note="FDX-ACB"
FT   BINDING         433
FT                   /ligand="Mg(2+)"
FT                   /ligand_id="ChEBI:CHEBI:18420"
FT                   /ligand_note="shared with alpha subunit"
FT                   /evidence="ECO:0000250"
FT   BINDING         439
FT                   /ligand="Mg(2+)"
FT                   /ligand_id="ChEBI:CHEBI:18420"
FT                   /ligand_note="shared with alpha subunit"
FT                   /evidence="ECO:0000250"
FT   BINDING         442
FT                   /ligand="Mg(2+)"
FT                   /ligand_id="ChEBI:CHEBI:18420"
FT                   /ligand_note="shared with alpha subunit"
FT                   /evidence="ECO:0000250"
FT   BINDING         443
FT                   /ligand="Mg(2+)"
FT                   /ligand_id="ChEBI:CHEBI:18420"
FT                   /ligand_note="shared with alpha subunit"
FT                   /evidence="ECO:0000250"
SQ   SEQUENCE   764 AA;  85136 MW;  CE182690F7B30C68 CRC64;
     MKLSINDLNV FVNTPKDIAK LCEDLSRLGL EVESCIPCIA PKNVVVGKIL EKAPHKNAEK
     LSVCQVDVGK EVLQIVCGAK NVAPNQFVPV ALNGALIGST TIAKTELRGV ESHGMICSSI
     ELGFPKINDG ILELDESVGE LVLGKELNEY APFNTHVLEI SLTPNRGDCL SVLGIAREIS
     AFYHTPLKPI KALNFTPKSG LITLSAGENI ESHLAYYLIC NHSLKTPLNI KLSLAHNNAL
     SENDLNNFIE FSTHFSGVIM NAYSLNTTPM DLSVKNDENN LESVYINHQK RSTIAIKHQV
     QKDLSECLLL EASYTDPISL SLKLHALKDK TLQKDNALIY RSARGSNPNL SDGLNFLSAH
     LKATILESKQ TEHSLKDRTL TFQLEDITEI LGLAVEKEKI QGILKNLGFK VSVKEPNSKP
     QILEVIAPNF RHDIKTIQDI AEEILRFVGI DNLVSKPLHC VSSKNSNPNY DTHRFFENLK
     HKALACGFKE VIHYVFYSKE KQQKLGFEVL EDPLELQNPI TTELNTLRTS LVCGLLDASL
     RNKNLGFKSI ALYEKGSVYN SKREEIQKLG FLISGLQKKE SYPDTKGKAW DFYSFAECVS
     KVIGDFSLEK LTTQTPINHP YQSAKIIQNH EIIGVIAKIH PKVIQELDLF ESYYAEIDAF
     KLKRPAMLLK PFSIYPSSVR DLTLIIDENT AFSGIKKALK DAQIPNLSEI LPLDIFKESN
     NSIALSVRCV IHSLEKTLND EEVNSAVQKA LEILEKEFNA RLKG
 
 
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