BOP1_ORYSJ
ID BOP1_ORYSJ Reviewed; 678 AA.
AC Q0D6V7; Q6Z3V6;
DT 05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 122.
DE RecName: Full=Ribosome biogenesis protein BOP1 homolog {ECO:0000255|HAMAP-Rule:MF_03027};
GN Name=BOP1 {ECO:0000305};
GN OrderedLocusNames=Os07g0435400 {ECO:0000312|EMBL:BAT01239.1},
GN LOC_Os07g25440 {ECO:0000305};
GN ORFNames=OsJ_24034 {ECO:0000312|EMBL:EEE67069.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000312|EMBL:BAF21416.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Required for maturation of ribosomal RNAs and formation of
CC the large ribosomal subunit. {ECO:0000255|HAMAP-Rule:MF_03027}.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus {ECO:0000255|HAMAP-
CC Rule:MF_03027}. Nucleus, nucleoplasm {ECO:0000255|HAMAP-Rule:MF_03027}.
CC -!- SIMILARITY: Belongs to the WD repeat BOP1/ERB1 family.
CC {ECO:0000255|HAMAP-Rule:MF_03027}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC84089.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP005200; BAC84089.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008213; BAF21416.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT01239.1; -; Genomic_DNA.
DR EMBL; CM000144; EEE67069.1; -; Genomic_DNA.
DR EMBL; AK111603; BAG99327.1; -; mRNA.
DR RefSeq; XP_015647313.1; XM_015791827.1.
DR AlphaFoldDB; Q0D6V7; -.
DR SMR; Q0D6V7; -.
DR STRING; 4530.OS07T0435400-01; -.
DR PaxDb; Q0D6V7; -.
DR PRIDE; Q0D6V7; -.
DR EnsemblPlants; Os07t0435400-01; Os07t0435400-01; Os07g0435400.
DR GeneID; 4343071; -.
DR Gramene; Os07t0435400-01; Os07t0435400-01; Os07g0435400.
DR KEGG; osa:4343071; -.
DR eggNOG; KOG0650; Eukaryota.
DR HOGENOM; CLU_011390_2_0_1; -.
DR InParanoid; Q0D6V7; -.
DR OMA; MRPAKGE; -.
DR OrthoDB; 759498at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR GO; GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0070545; C:PeBoW complex; IBA:GO_Central.
DR GO; GO:0030687; C:preribosome, large subunit precursor; IBA:GO_Central.
DR GO; GO:0043021; F:ribonucleoprotein complex binding; IBA:GO_Central.
DR GO; GO:0007276; P:gamete generation; IEA:EnsemblPlants.
DR GO; GO:0000466; P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IEA:UniProtKB-UniRule.
DR GO; GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IBA:GO_Central.
DR GO; GO:0051302; P:regulation of cell division; IEA:EnsemblPlants.
DR Gene3D; 2.130.10.10; -; 1.
DR HAMAP; MF_03027; BOP1; 1.
DR InterPro; IPR028598; BOP1/Erb1.
DR InterPro; IPR012953; BOP1_N_dom.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR001680; WD40_repeat.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR PANTHER; PTHR17605; PTHR17605; 1.
DR Pfam; PF08145; BOP1NT; 1.
DR Pfam; PF00400; WD40; 3.
DR SMART; SM01035; BOP1NT; 1.
DR SMART; SM00320; WD40; 5.
DR SUPFAM; SSF50978; SSF50978; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 1.
DR PROSITE; PS50294; WD_REPEATS_REGION; 2.
PE 2: Evidence at transcript level;
KW Nucleus; Reference proteome; Repeat; Ribosome biogenesis; rRNA processing;
KW WD repeat.
FT CHAIN 1..678
FT /note="Ribosome biogenesis protein BOP1 homolog"
FT /id="PRO_0000437495"
FT REPEAT 343..384
FT /note="WD 1"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03027"
FT REPEAT 386..424
FT /note="WD 2"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03027"
FT REPEAT 463..505
FT /note="WD 3"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03027"
FT REPEAT 508..548
FT /note="WD 4"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03027"
FT REPEAT 549..588
FT /note="WD 5"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03027"
FT REPEAT 592..631
FT /note="WD 6"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03027"
FT REPEAT 647..678
FT /note="WD 7"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_03027"
FT REGION 1..73
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 21..59
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 678 AA; 77222 MW; 501958A2C28E5AEF CRC64;
MGHSDGDHGS DLSADDSPWS EGSWSDDDDE GSLSFEDSGE GSDAESDEPD APAVEESDSS
EDEVAPRNTI GDVPLEWYKN EEHIGYDITG SKIKKRDREG RIEAYLRNAD DAKNWRKIYD
EYNDEEVQIT KEEAKIISRL LKGKTPHTNV DPYPDYVDWF EYDGKGHPLS SAPEPKRRFV
PSRWEQKKVV KLVRAIRKGW IKFDKPKEEP NFYLLWGDET DTADNKRQGL SYIPAPKPNL
PGHEESYNPS VEYIPTQEEI DSYQLMYEED RPKFIPRKFD CLRSVPAYEK ALREGFDRCL
DLYLCPRTRK KRINIDPESL KPKLPSKKDL RPYPRTCYLE FKGHNGPVKS LSVEATGQWI
ASGSSDGTIR VWEVETGRCI KVWNVGGVVH RIAWNPSPDR HILAAVVDHD LLLLNAEVGD
EDAQMKTKGL LQIEELAQEE DNGDKKPAVK WVKHEKFDGI MLIHHKAVST VEWHFKGDYF
TTVVPSGDSR AVLLHQLSKK HSHHPFRKLP GLPIAAVFHP SQKMFFVATK KFVQVYDLQK
AQLVKKLESG VREISSISIH PGGDNVIVGS KDGKLCWFDT DLSTRPYKTL KNHSKDITNV
TFHRKYPLFA SSSEDCTAYV FHGMVYSDLN QNPLIVPLEI LRGHSSSDGR GVLDCKFHPR
QPWLFTAGAD SVVRLYCD
