SYVC_DICDI
ID SYVC_DICDI Reviewed; 1072 AA.
AC Q86KU2; Q54Z84;
DT 08-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=Probable valine--tRNA ligase, cytoplasmic;
DE EC=6.1.1.9;
DE AltName: Full=Valyl-tRNA synthetase;
DE Short=ValRS;
GN Name=valS1; ORFNames=DDB_G0277733;
OS Dictyostelium discoideum (Slime mold).
OC Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales;
OC Dictyosteliaceae; Dictyostelium.
OX NCBI_TaxID=44689;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AX4;
RX PubMed=12097910; DOI=10.1038/nature00847;
RA Gloeckner G., Eichinger L., Szafranski K., Pachebat J.A., Bankier A.T.,
RA Dear P.H., Lehmann R., Baumgart C., Parra G., Abril J.F., Guigo R.,
RA Kumpf K., Tunggal B., Cox E.C., Quail M.A., Platzer M., Rosenthal A.,
RA Noegel A.A.;
RT "Sequence and analysis of chromosome 2 of Dictyostelium discoideum.";
RL Nature 418:79-85(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AX4;
RX PubMed=15875012; DOI=10.1038/nature03481;
RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R.,
RA Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B.,
RA Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T.,
RA Lehmann R., Hamlin N., Davies R., Gaudet P., Fey P., Pilcher K., Chen G.,
RA Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N.,
RA Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E.,
RA Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N.,
RA Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D.,
RA Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T.,
RA Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D.,
RA Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A.,
RA Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M.,
RA Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A.,
RA Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y.,
RA Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C.,
RA Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R.,
RA Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.;
RT "The genome of the social amoeba Dictyostelium discoideum.";
RL Nature 435:43-57(2005).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + L-valine + tRNA(Val) = AMP + diphosphate + L-valyl-
CC tRNA(Val); Xref=Rhea:RHEA:10704, Rhea:RHEA-COMP:9672, Rhea:RHEA-
CC COMP:9708, ChEBI:CHEBI:30616, ChEBI:CHEBI:33019, ChEBI:CHEBI:57762,
CC ChEBI:CHEBI:78442, ChEBI:CHEBI:78537, ChEBI:CHEBI:456215; EC=6.1.1.9;
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase family.
CC {ECO:0000305}.
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DR EMBL; AAFI02000022; EAL68540.1; -; Genomic_DNA.
DR RefSeq; XP_642469.1; XM_637377.1.
DR AlphaFoldDB; Q86KU2; -.
DR SMR; Q86KU2; -.
DR STRING; 44689.DDB0231269; -.
DR PaxDb; Q86KU2; -.
DR EnsemblProtists; EAL68540; EAL68540; DDB_G0277733.
DR GeneID; 8621180; -.
DR KEGG; ddi:DDB_G0277733; -.
DR dictyBase; DDB_G0277733; valS1.
DR eggNOG; KOG0432; Eukaryota.
DR HOGENOM; CLU_001493_0_1_1; -.
DR InParanoid; Q86KU2; -.
DR OMA; FATKLWN; -.
DR PhylomeDB; Q86KU2; -.
DR PRO; PR:Q86KU2; -.
DR Proteomes; UP000002195; Chromosome 2.
DR GO; GO:0005737; C:cytoplasm; ISS:dictyBase.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0031012; C:extracellular matrix; HDA:dictyBase.
DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0004832; F:valine-tRNA ligase activity; ISS:dictyBase.
DR GO; GO:0006438; P:valyl-tRNA aminoacylation; ISS:dictyBase.
DR CDD; cd07962; Anticodon_Ia_Val; 1.
DR Gene3D; 3.40.50.620; -; 2.
DR HAMAP; MF_02004; Val_tRNA_synth_type1; 1.
DR InterPro; IPR001412; aa-tRNA-synth_I_CS.
DR InterPro; IPR002300; aa-tRNA-synth_Ia.
DR InterPro; IPR033705; Anticodon_Ia_Val.
DR InterPro; IPR013155; M/V/L/I-tRNA-synth_anticd-bd.
DR InterPro; IPR014729; Rossmann-like_a/b/a_fold.
DR InterPro; IPR009080; tRNAsynth_Ia_anticodon-bd.
DR InterPro; IPR009008; Val/Leu/Ile-tRNA-synth_edit.
DR InterPro; IPR002303; Valyl-tRNA_ligase.
DR PANTHER; PTHR11946; PTHR11946; 1.
DR Pfam; PF08264; Anticodon_1; 1.
DR Pfam; PF00133; tRNA-synt_1; 1.
DR PRINTS; PR00986; TRNASYNTHVAL.
DR SUPFAM; SSF47323; SSF47323; 1.
DR SUPFAM; SSF50677; SSF50677; 1.
DR TIGRFAMs; TIGR00422; valS; 1.
DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1.
PE 3: Inferred from homology;
KW Aminoacyl-tRNA synthetase; ATP-binding; Coiled coil; Cytoplasm; Ligase;
KW Nucleotide-binding; Protein biosynthesis; Reference proteome.
FT CHAIN 1..1072
FT /note="Probable valine--tRNA ligase, cytoplasmic"
FT /id="PRO_0000327760"
FT REGION 1..79
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 10..90
FT /evidence="ECO:0000255"
FT COILED 1003..1069
FT /evidence="ECO:0000255"
FT MOTIF 151..161
FT /note="'HIGH' region"
FT /evidence="ECO:0000250"
FT MOTIF 668..672
FT /note="'KMSKS' region"
FT /evidence="ECO:0000250"
FT COMPBIAS 8..79
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 671
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000250"
SQ SEQUENCE 1072 AA; 122834 MW; 110221A2569A41A5 CRC64;
MSEPKPTQPI KEIDEETKRK NEEKKKAKEA EKAEKLAKMK EKEAKQAAAK EKELQNKLKK
EQEKKEKEAE EKEKQEAEEK IVREHIEKIL KTPKGEKKDV SSLLSSYHPT AVESIWYDYW
LDNGYFSPEK QMEIQPHVVK DKKFVIVIPP PNVTGSLHLG HALTNSIQDA VVRYHRMKGE
VCLWVPGTDH AGIATQVVVE KKIWKENKIT RHDLGREGFI KKVWEWKGEY GARIQGQLKK
MGSSVDWSRE VFTMDDQRSK AVNTAFIRMF NDGLIVRTTR LVNWSCALKT AISDIEVDFI
DLEKHTKMSV PGHQGQYDFG VLFEFAYQVE GSGEELVVAT TRIETMLADT AIAIHPDDTR
YTHLHGKFAI HPLNGRKIPI ITDSVLVDKD FGTGVVKITP SHDPNDYETA LRHGLEFINL
FTDEGLINEN GGERFAGMKR FDARNAVVEA LKEKNLFKGM KDNKMRLGLC SRSKDVIEPM
IKPQWYVKCD DMAARAVKAV RDGDLKITPK THEVTWYRWL EGIKDWCVSR QLWWGHRIPA
YHCIIKGVKS NPYDTNQWVV GANQEEATQN AIEKFKLSSK DDILSLEQDP DVLDTWFSSG
LFPFSVMGWP EQTQDMQDYY PTSLLETGSD ILFFWVARMV MMGQQLTGKL PFEQVFLHAM
VRDSHGRKMS KSLGNVIDPN DVIKGISLDE LIAKLYEGNL DSKEIEKATS GVKSDFPTGI
AECGTDAMRF ALCAYTSQGR DINLDIQRVV GYRNFCNKIW NATRFAHMKL GDSFKPESFD
ASKLLQQSNA INLWILNAAQ RAITLSEEGF KEYDFSKVTT AIYSFWLNEM CDVYLEMTKS
IFSLEEDSPI KQKTKETLYT CIDIGLRLLH PFMPYLTEEL YQSLPRRPED VIPTIMLCPY
PQSQSCWANS DIEEEMKQCQ DIIKSIRSLR ATYTIPASKK LHTYLHVKNQ ENLERFTKNS
SFIRVLAYAS ELEVSISDES RPGCIVNVVN ENVSTLLDVR GSVDFNLEIA RLETKKQQLV
KNYETLVSKT TIPSYDKVPQ NIRDDNTQKI KALDEEINIT NKTIESFTKL NI