SYV_ANAMM
ID SYV_ANAMM Reviewed; 823 AA.
AC Q5P9M8;
DT 07-MAR-2006, integrated into UniProtKB/Swiss-Prot.
DT 04-JAN-2005, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=Valine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02005};
DE EC=6.1.1.9 {ECO:0000255|HAMAP-Rule:MF_02005};
DE AltName: Full=Valyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02005};
DE Short=ValRS {ECO:0000255|HAMAP-Rule:MF_02005};
GN Name=valS {ECO:0000255|HAMAP-Rule:MF_02005}; OrderedLocusNames=AM1170;
OS Anaplasma marginale (strain St. Maries).
OC Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
OC Anaplasmataceae; Anaplasma.
OX NCBI_TaxID=234826;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=St. Maries;
RX PubMed=15618402; DOI=10.1073/pnas.0406656102;
RA Brayton K.A., Kappmeyer L.S., Herndon D.R., Dark M.J., Tibbals D.L.,
RA Palmer G.H., McGuire T.C., Knowles D.P. Jr.;
RT "Complete genome sequencing of Anaplasma marginale reveals that the surface
RT is skewed to two superfamilies of outer membrane proteins.";
RL Proc. Natl. Acad. Sci. U.S.A. 102:844-849(2005).
CC -!- FUNCTION: Catalyzes the attachment of valine to tRNA(Val). As ValRS can
CC inadvertently accommodate and process structurally similar amino acids
CC such as threonine, to avoid such errors, it has a 'posttransfer'
CC editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-
CC dependent manner. {ECO:0000255|HAMAP-Rule:MF_02005}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + L-valine + tRNA(Val) = AMP + diphosphate + L-valyl-
CC tRNA(Val); Xref=Rhea:RHEA:10704, Rhea:RHEA-COMP:9672, Rhea:RHEA-
CC COMP:9708, ChEBI:CHEBI:30616, ChEBI:CHEBI:33019, ChEBI:CHEBI:57762,
CC ChEBI:CHEBI:78442, ChEBI:CHEBI:78537, ChEBI:CHEBI:456215; EC=6.1.1.9;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_02005};
CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_02005}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_02005}.
CC -!- DOMAIN: ValRS has two distinct active sites: one for aminoacylation and
CC one for editing. The misactivated threonine is translocated from the
CC active site to the editing site. {ECO:0000255|HAMAP-Rule:MF_02005}.
CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase family.
CC ValS type 2 subfamily. {ECO:0000255|HAMAP-Rule:MF_02005}.
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DR EMBL; CP000030; AAV87002.1; -; Genomic_DNA.
DR AlphaFoldDB; Q5P9M8; -.
DR SMR; Q5P9M8; -.
DR KEGG; ama:AM1170; -.
DR HOGENOM; CLU_001493_0_2_5; -.
DR OMA; RQWYIRN; -.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004832; F:valine-tRNA ligase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006438; P:valyl-tRNA aminoacylation; IEA:UniProtKB-UniRule.
DR CDD; cd07962; Anticodon_Ia_Val; 1.
DR Gene3D; 3.40.50.620; -; 2.
DR Gene3D; 3.90.740.10; -; 1.
DR HAMAP; MF_02005; Val_tRNA_synth_type2; 1.
DR InterPro; IPR001412; aa-tRNA-synth_I_CS.
DR InterPro; IPR002300; aa-tRNA-synth_Ia.
DR InterPro; IPR033705; Anticodon_Ia_Val.
DR InterPro; IPR013155; M/V/L/I-tRNA-synth_anticd-bd.
DR InterPro; IPR014729; Rossmann-like_a/b/a_fold.
DR InterPro; IPR009080; tRNAsynth_Ia_anticodon-bd.
DR InterPro; IPR009008; Val/Leu/Ile-tRNA-synth_edit.
DR InterPro; IPR022874; Valine-tRNA_ligase_type_2.
DR InterPro; IPR002303; Valyl-tRNA_ligase.
DR PANTHER; PTHR11946; PTHR11946; 1.
DR Pfam; PF08264; Anticodon_1; 1.
DR Pfam; PF00133; tRNA-synt_1; 1.
DR PRINTS; PR00986; TRNASYNTHVAL.
DR SUPFAM; SSF47323; SSF47323; 1.
DR SUPFAM; SSF50677; SSF50677; 1.
DR TIGRFAMs; TIGR00422; valS; 1.
DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1.
PE 3: Inferred from homology;
KW Aminoacyl-tRNA synthetase; ATP-binding; Cytoplasm; Ligase;
KW Nucleotide-binding; Protein biosynthesis.
FT CHAIN 1..823
FT /note="Valine--tRNA ligase"
FT /id="PRO_0000224606"
FT MOTIF 52..62
FT /note="'HIGH' region"
FT MOTIF 549..553
FT /note="'KMSKS' region"
FT BINDING 552
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_02005"
SQ SEQUENCE 823 AA; 94004 MW; C8F916707C698F84 CRC64;
MNVRVRHFMQ SLDSRYQHKT VEEECNAAWD EHKIYKWKGN VAQSFVIDTP PPTVSGVLHM
GHVFSYCHTD FIARYQRMAG KDVFYPIGFD DNGLPTERLV EKIKKLRAVQ LERAEFTKMC
REVSHEFRTK FRNLFRRLGI SYDWALEYHT VSEEVQRLSQ ASFLDLYAKD KLYRKQQPIL
WDTVDCTAIA HAEVEELDLH SHLNTISFHT VGGEKIDIAT TRPELIPACV ALFFNPEDDR
YTHLHGQFAV VPVGGHKVKI LPDDKVRIDK GTGLVMCCTF GDETDVYWWR THNLDTKTIV
SRTGHIVDLA EDTPDAKIPA AQFDGMHVQK ARKAVCDALE GAGLLVSQEP IVHTVKCAER
SGAPIEILLS HQWFVRVMEH KHELLEQVQK VQWHPDSMRK RMEIWIENLN WDWCISRQRY
FGVPFPVWYS KREGEVGKVL LPDVRDLPVD PLRDLPSGYG RDEVEPDVDV MDTWATSSIS
PQFLTKSVGQ VLRNENLEPL FPTDLRAQSH EIIRSWAFYT MLKSYYHNGE IPWQNIMISG
WCLAEDKTKM SKSKGNAMDP ESTLDLYGAD SVRYWAAKSR LGADTVFSEE VLKTGRRLTT
KLWNASKFVA TFFLRDNPPA GTTAAPTDLW ILSKLHKAVA HNTENLKLFE YCAALNRTEE
FFWKDFCDNY LELVKHRAYN HGSAHGHASA VSTLHHTLKT LLLLFAPFLP YVTEAVYGTL
FSGCIHAQEW PNADEIPYNA SLEQHGDALI KIVEEVRKAK THAQVSVKYP VELITIGGLA
TDFPESMLED LKHMCCAEQI KLTAPDSTEL EVAVTLAPTV SSN