SYV_CHLPN
ID SYV_CHLPN Reviewed; 940 AA.
AC Q9Z987; Q9JQA5;
DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 03-AUG-2022, entry version 138.
DE RecName: Full=Valine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02004};
DE EC=6.1.1.9 {ECO:0000255|HAMAP-Rule:MF_02004};
DE AltName: Full=Valyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02004};
DE Short=ValRS {ECO:0000255|HAMAP-Rule:MF_02004};
GN Name=valS {ECO:0000255|HAMAP-Rule:MF_02004};
GN OrderedLocusNames=CPn_0094, CP_0680, CpB0094;
OS Chlamydia pneumoniae (Chlamydophila pneumoniae).
OC Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae;
OC Chlamydia/Chlamydophila group; Chlamydia.
OX NCBI_TaxID=83558;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CWL029;
RX PubMed=10192388; DOI=10.1038/7716;
RA Kalman S., Mitchell W.P., Marathe R., Lammel C.J., Fan J., Hyman R.W.,
RA Olinger L., Grimwood J., Davis R.W., Stephens R.S.;
RT "Comparative genomes of Chlamydia pneumoniae and C. trachomatis.";
RL Nat. Genet. 21:385-389(1999).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AR39;
RX PubMed=10684935; DOI=10.1093/nar/28.6.1397;
RA Read T.D., Brunham R.C., Shen C., Gill S.R., Heidelberg J.F., White O.,
RA Hickey E.K., Peterson J.D., Utterback T.R., Berry K.J., Bass S.,
RA Linher K.D., Weidman J.F., Khouri H.M., Craven B., Bowman C., Dodson R.J.,
RA Gwinn M.L., Nelson W.C., DeBoy R.T., Kolonay J.F., McClarty G.,
RA Salzberg S.L., Eisen J.A., Fraser C.M.;
RT "Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae
RT AR39.";
RL Nucleic Acids Res. 28:1397-1406(2000).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=J138;
RX PubMed=10871362; DOI=10.1093/nar/28.12.2311;
RA Shirai M., Hirakawa H., Kimoto M., Tabuchi M., Kishi F., Ouchi K.,
RA Shiba T., Ishii K., Hattori M., Kuhara S., Nakazawa T.;
RT "Comparison of whole genome sequences of Chlamydia pneumoniae J138 from
RT Japan and CWL029 from USA.";
RL Nucleic Acids Res. 28:2311-2314(2000).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TW-183;
RA Geng M.M., Schuhmacher A., Muehldorfer I., Bensch K.W., Schaefer K.P.,
RA Schneider S., Pohl T., Essig A., Marre R., Melchers K.;
RT "The genome sequence of Chlamydia pneumoniae TW183 and comparison with
RT other Chlamydia strains based on whole genome sequence analysis.";
RL Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Catalyzes the attachment of valine to tRNA(Val). As ValRS can
CC inadvertently accommodate and process structurally similar amino acids
CC such as threonine, to avoid such errors, it has a 'posttransfer'
CC editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-
CC dependent manner. {ECO:0000255|HAMAP-Rule:MF_02004}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + L-valine + tRNA(Val) = AMP + diphosphate + L-valyl-
CC tRNA(Val); Xref=Rhea:RHEA:10704, Rhea:RHEA-COMP:9672, Rhea:RHEA-
CC COMP:9708, ChEBI:CHEBI:30616, ChEBI:CHEBI:33019, ChEBI:CHEBI:57762,
CC ChEBI:CHEBI:78442, ChEBI:CHEBI:78537, ChEBI:CHEBI:456215; EC=6.1.1.9;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_02004};
CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_02004}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_02004}.
CC -!- DOMAIN: ValRS has two distinct active sites: one for aminoacylation and
CC one for editing. The misactivated threonine is translocated from the
CC active site to the editing site. {ECO:0000255|HAMAP-Rule:MF_02004}.
CC -!- DOMAIN: The C-terminal coiled-coil domain is crucial for aminoacylation
CC activity. {ECO:0000255|HAMAP-Rule:MF_02004}.
CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase family.
CC ValS type 1 subfamily. {ECO:0000255|HAMAP-Rule:MF_02004}.
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DR EMBL; AE001363; AAD18247.1; -; Genomic_DNA.
DR EMBL; AE002161; AAF38490.1; -; Genomic_DNA.
DR EMBL; BA000008; BAA98304.1; -; Genomic_DNA.
DR EMBL; AE009440; AAP98027.1; -; Genomic_DNA.
DR PIR; B72120; B72120.
DR PIR; F86502; F86502.
DR RefSeq; NP_224302.1; NC_000922.1.
DR RefSeq; WP_010882744.1; NZ_LN847257.1.
DR AlphaFoldDB; Q9Z987; -.
DR SMR; Q9Z987; -.
DR STRING; 115711.CP_0680; -.
DR PRIDE; Q9Z987; -.
DR EnsemblBacteria; AAD18247; AAD18247; CPn_0094.
DR EnsemblBacteria; AAF38490; AAF38490; CP_0680.
DR GeneID; 45050139; -.
DR KEGG; cpa:CP_0680; -.
DR KEGG; cpj:valS; -.
DR KEGG; cpn:CPn_0094; -.
DR KEGG; cpt:CpB0094; -.
DR PATRIC; fig|115713.3.peg.107; -.
DR eggNOG; COG0525; Bacteria.
DR HOGENOM; CLU_001493_0_2_0; -.
DR OrthoDB; 32262at2; -.
DR Proteomes; UP000000583; Chromosome.
DR Proteomes; UP000000801; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004832; F:valine-tRNA ligase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006438; P:valyl-tRNA aminoacylation; IEA:UniProtKB-UniRule.
DR CDD; cd07962; Anticodon_Ia_Val; 1.
DR Gene3D; 1.10.287.380; -; 1.
DR Gene3D; 3.40.50.620; -; 2.
DR HAMAP; MF_02004; Val_tRNA_synth_type1; 1.
DR InterPro; IPR001412; aa-tRNA-synth_I_CS.
DR InterPro; IPR002300; aa-tRNA-synth_Ia.
DR InterPro; IPR033705; Anticodon_Ia_Val.
DR InterPro; IPR013155; M/V/L/I-tRNA-synth_anticd-bd.
DR InterPro; IPR014729; Rossmann-like_a/b/a_fold.
DR InterPro; IPR010978; tRNA-bd_arm.
DR InterPro; IPR009080; tRNAsynth_Ia_anticodon-bd.
DR InterPro; IPR037118; Val-tRNA_synth_C_sf.
DR InterPro; IPR009008; Val/Leu/Ile-tRNA-synth_edit.
DR InterPro; IPR002303; Valyl-tRNA_ligase.
DR PANTHER; PTHR11946; PTHR11946; 1.
DR Pfam; PF08264; Anticodon_1; 1.
DR Pfam; PF00133; tRNA-synt_1; 2.
DR PRINTS; PR00986; TRNASYNTHVAL.
DR SUPFAM; SSF46589; SSF46589; 1.
DR SUPFAM; SSF47323; SSF47323; 1.
DR SUPFAM; SSF50677; SSF50677; 1.
DR TIGRFAMs; TIGR00422; valS; 1.
DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1.
PE 3: Inferred from homology;
KW Aminoacyl-tRNA synthetase; ATP-binding; Coiled coil; Cytoplasm; Ligase;
KW Nucleotide-binding; Protein biosynthesis.
FT CHAIN 1..940
FT /note="Valine--tRNA ligase"
FT /id="PRO_0000106221"
FT COILED 873..905
FT /evidence="ECO:0000255|HAMAP-Rule:MF_02004"
FT MOTIF 47..57
FT /note="'HIGH' region"
FT MOTIF 564..568
FT /note="'KMSKS' region"
FT BINDING 567
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_02004"
SQ SEQUENCE 940 AA; 107111 MW; 28054683FB9D0404 CRC64;
MTTEDFPKAY NFQDTEPELY VFWEKNGMFK AEASSDKPPY SVIMPPPNVT GVLHMGHALV
NTLQDVLVRY KRMSGFEVCW IPGTDHAGIA TQAVVERHLQ ASEGKRRTDY SREDFLKHIW
AWKEKSEKVV LSQLRQLGCS CDWDRKRFTM EPLANRAVKK AFKTLFENGY IYRGYYLVNW
DPVLQTALAD DEVEYEEKDG WLYYIRYRMV GSQESIVVAT TRPETSLGDT GIAVSPNDER
YASWIGASVE VPFVNRQIPI IGDASVDPTF GTGAVKVTPA HDKDDYLMGT NHHLPMINIL
TPSGGINENG GPFAGMAKEK AREEILIALE EQGLFVRKEP YKLRVGVSYR SGAVIEPYLS
KQWFVSVSEF RGALREFVES QDIKIFPKDF VKNYLSWVNH LRDWCISRQL WWGHRIPVWY
HKNDDERVLC YDGEGIPEEV AQDPDSWYQD PDVLDTWFSS GLWPLTCLGW PDENSPDLKK
FYPTALLVTG HDILFFWVTR MVLLCSSMSG EKPFSEVFLH GLIFGKSYKR YNDFGEWSYI
SGKEKLAYDM GEALPDGVVA KWEKLSKSKG NVIDPLEMIA TYGTDAVRLT LCSCANRGEQ
IDLDYRLFEE YKHFANKVWN GARFIFGHIS DLQGKDLLAG IDEDSLGLED FYILDGFNQL
IHQLEEAYAT YAFDKVATLA YEFFRNDLCS TYIEIIKPTL FGKQGNEASQ STKRTLLAVL
LINVLGVLHP VAPFITESLF LRIQDTLGAL PEGDGDAFTG HALRMLRSRA CMEAPYPKAF
DVKIPQDLRE SFTLAQRLVY TIRNIRGEMQ LDPRLHLKAF VVCSDTTEIQ SCIPILQALG
GLESIQLLDK EPEKGLYSFG VVDTIRLGIF VPEEHLLKEK GRLEKERVRL ERAVENLERL
LGDESFCQKA NPNLVVAKQE ALKNNRIELQ GILDKLASFA