SYV_PROMM
ID SYV_PROMM Reviewed; 929 AA.
AC Q7TUI9;
DT 07-MAR-2006, integrated into UniProtKB/Swiss-Prot.
DT 07-MAR-2006, sequence version 2.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=Valine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02004};
DE EC=6.1.1.9 {ECO:0000255|HAMAP-Rule:MF_02004};
DE AltName: Full=Valyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02004};
DE Short=ValRS {ECO:0000255|HAMAP-Rule:MF_02004};
GN Name=valS {ECO:0000255|HAMAP-Rule:MF_02004}; OrderedLocusNames=PMT_2191;
OS Prochlorococcus marinus (strain MIT 9313).
OC Bacteria; Cyanobacteria; Synechococcales; Prochlorococcaceae;
OC Prochlorococcus.
OX NCBI_TaxID=74547;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MIT 9313;
RX PubMed=12917642; DOI=10.1038/nature01947;
RA Rocap G., Larimer F.W., Lamerdin J.E., Malfatti S., Chain P., Ahlgren N.A.,
RA Arellano A., Coleman M., Hauser L., Hess W.R., Johnson Z.I., Land M.L.,
RA Lindell D., Post A.F., Regala W., Shah M., Shaw S.L., Steglich C.,
RA Sullivan M.B., Ting C.S., Tolonen A., Webb E.A., Zinser E.R.,
RA Chisholm S.W.;
RT "Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche
RT differentiation.";
RL Nature 424:1042-1047(2003).
CC -!- FUNCTION: Catalyzes the attachment of valine to tRNA(Val). As ValRS can
CC inadvertently accommodate and process structurally similar amino acids
CC such as threonine, to avoid such errors, it has a 'posttransfer'
CC editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-
CC dependent manner. {ECO:0000255|HAMAP-Rule:MF_02004}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + L-valine + tRNA(Val) = AMP + diphosphate + L-valyl-
CC tRNA(Val); Xref=Rhea:RHEA:10704, Rhea:RHEA-COMP:9672, Rhea:RHEA-
CC COMP:9708, ChEBI:CHEBI:30616, ChEBI:CHEBI:33019, ChEBI:CHEBI:57762,
CC ChEBI:CHEBI:78442, ChEBI:CHEBI:78537, ChEBI:CHEBI:456215; EC=6.1.1.9;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_02004};
CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_02004}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_02004}.
CC -!- DOMAIN: ValRS has two distinct active sites: one for aminoacylation and
CC one for editing. The misactivated threonine is translocated from the
CC active site to the editing site. {ECO:0000255|HAMAP-Rule:MF_02004}.
CC -!- DOMAIN: The C-terminal coiled-coil domain is crucial for aminoacylation
CC activity. {ECO:0000255|HAMAP-Rule:MF_02004}.
CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase family.
CC ValS type 1 subfamily. {ECO:0000255|HAMAP-Rule:MF_02004}.
CC -!- SEQUENCE CAUTION:
CC Sequence=CAE22365.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; BX548175; CAE22365.1; ALT_INIT; Genomic_DNA.
DR AlphaFoldDB; Q7TUI9; -.
DR SMR; Q7TUI9; -.
DR STRING; 74547.PMT_2191; -.
DR PRIDE; Q7TUI9; -.
DR EnsemblBacteria; CAE22365; CAE22365; PMT_2191.
DR KEGG; pmt:PMT_2191; -.
DR eggNOG; COG0525; Bacteria.
DR HOGENOM; CLU_001493_0_2_3; -.
DR Proteomes; UP000001423; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004832; F:valine-tRNA ligase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006438; P:valyl-tRNA aminoacylation; IEA:UniProtKB-UniRule.
DR CDD; cd07962; Anticodon_Ia_Val; 1.
DR Gene3D; 1.10.287.380; -; 1.
DR Gene3D; 3.40.50.620; -; 2.
DR Gene3D; 3.90.740.10; -; 1.
DR HAMAP; MF_02004; Val_tRNA_synth_type1; 1.
DR InterPro; IPR001412; aa-tRNA-synth_I_CS.
DR InterPro; IPR002300; aa-tRNA-synth_Ia.
DR InterPro; IPR033705; Anticodon_Ia_Val.
DR InterPro; IPR013155; M/V/L/I-tRNA-synth_anticd-bd.
DR InterPro; IPR014729; Rossmann-like_a/b/a_fold.
DR InterPro; IPR010978; tRNA-bd_arm.
DR InterPro; IPR009080; tRNAsynth_Ia_anticodon-bd.
DR InterPro; IPR037118; Val-tRNA_synth_C_sf.
DR InterPro; IPR019499; Val-tRNA_synth_tRNA-bd.
DR InterPro; IPR009008; Val/Leu/Ile-tRNA-synth_edit.
DR InterPro; IPR002303; Valyl-tRNA_ligase.
DR PANTHER; PTHR11946; PTHR11946; 1.
DR Pfam; PF08264; Anticodon_1; 1.
DR Pfam; PF00133; tRNA-synt_1; 1.
DR Pfam; PF10458; Val_tRNA-synt_C; 1.
DR PRINTS; PR00986; TRNASYNTHVAL.
DR SUPFAM; SSF46589; SSF46589; 1.
DR SUPFAM; SSF47323; SSF47323; 1.
DR SUPFAM; SSF50677; SSF50677; 1.
DR TIGRFAMs; TIGR00422; valS; 1.
DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1.
PE 3: Inferred from homology;
KW Aminoacyl-tRNA synthetase; ATP-binding; Coiled coil; Cytoplasm; Ligase;
KW Nucleotide-binding; Protein biosynthesis; Reference proteome.
FT CHAIN 1..929
FT /note="Valine--tRNA ligase"
FT /id="PRO_0000224531"
FT COILED 862..929
FT /evidence="ECO:0000255|HAMAP-Rule:MF_02004"
FT MOTIF 59..69
FT /note="'HIGH' region"
FT MOTIF 557..561
FT /note="'KMSKS' region"
FT BINDING 560
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_02004"
SQ SEQUENCE 929 AA; 103444 MW; F6123CD7BED721AC CRC64;
MTELSAADPA FVQAADALAK TYDPAGTESR WQCAWEESGV FHPDPQAAGE PFSVVIPPPN
VTGSLHMGHA FNTALIDTIV RFQRLQGKNV LCLPGTDHAS IAVQTILEKQ LKAEAISRYD
LGREAFLERA WAWKEESGGR IVDQLRRLGY SVDWQRQRFT LDEGLSAAVR EAFVRLHEQG
LIYRGEYLVN WCPASGSAVS DLEVEMKEVD GHLWHLRYPL TGGPAADGTT HLEVATTRPE
TMLGDVAVAV NPADERYRHL VGQTLILPLL GREIPVIADD HVDQDFGTGC VKVTPAHDPN
DFAIGRRHDL PQITVMNKNG SMNGHAGRFE GLDRFEARKA VVAALQEEGL LVKVEPHRHS
VPYSDRGKVP VEPLLSTQWF VRMEPLAARC HECLDHGAPR FVPNRWQKVY RDWLTEIRDW
CISRQLWWGH RIPAWFVVSE TDDQLTDATP YLVARSEEEA WQQARDQFGE AVVIQQDEDV
LDTWFSSGLW PFSTMGWPDQ ESADLECWYP TSTLVTGFDI IFFWVARMTM MAGAFTGRMP
FADVYIHGLV RDEQNRKMSK SAGNGIDPLL LIERYGTDAL RFALVREVAG AGQDIRLDYD
RKSDTSATVE AARNFANKLW NATRFALMNL GGETPASLGE PDPASLQLAD RWILSRLARM
NRDVVERYDS YRLGEAAKCL YEFAWNDICD WYLELSKRRL HPGEDASGEV LADQCTARQV
LAKVLADLLV MLHPLMPHLS EELWHGLTGA PKDTFLALQS WPASNKSFLD DALELSFTEL
IEAIRVVRNL RAVAGLKPAQ TVPVQFITGR PELAALLEQA TADITALTRA ESVVVATSAD
LTQRCLAGVS GELQVLLPID GLVDLDALRG RLEKDLAKAE KEIAGLAGRL ANPNFAIKAP
PNVVEECQSN LAEAEAQAEL ARQRLSDLG