SYV_RICPR
ID SYV_RICPR Reviewed; 814 AA.
AC Q9ZCN6;
DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=Valine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02005};
DE EC=6.1.1.9 {ECO:0000255|HAMAP-Rule:MF_02005};
DE AltName: Full=Valyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02005};
DE Short=ValRS {ECO:0000255|HAMAP-Rule:MF_02005};
GN Name=valS {ECO:0000255|HAMAP-Rule:MF_02005}; OrderedLocusNames=RP687;
OS Rickettsia prowazekii (strain Madrid E).
OC Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales;
OC Rickettsiaceae; Rickettsieae; Rickettsia; typhus group.
OX NCBI_TaxID=272947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Madrid E;
RX PubMed=9823893; DOI=10.1038/24094;
RA Andersson S.G.E., Zomorodipour A., Andersson J.O., Sicheritz-Ponten T.,
RA Alsmark U.C.M., Podowski R.M., Naeslund A.K., Eriksson A.-S., Winkler H.H.,
RA Kurland C.G.;
RT "The genome sequence of Rickettsia prowazekii and the origin of
RT mitochondria.";
RL Nature 396:133-140(1998).
CC -!- FUNCTION: Catalyzes the attachment of valine to tRNA(Val). As ValRS can
CC inadvertently accommodate and process structurally similar amino acids
CC such as threonine, to avoid such errors, it has a 'posttransfer'
CC editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-
CC dependent manner. {ECO:0000255|HAMAP-Rule:MF_02005}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + L-valine + tRNA(Val) = AMP + diphosphate + L-valyl-
CC tRNA(Val); Xref=Rhea:RHEA:10704, Rhea:RHEA-COMP:9672, Rhea:RHEA-
CC COMP:9708, ChEBI:CHEBI:30616, ChEBI:CHEBI:33019, ChEBI:CHEBI:57762,
CC ChEBI:CHEBI:78442, ChEBI:CHEBI:78537, ChEBI:CHEBI:456215; EC=6.1.1.9;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_02005};
CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_02005}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_02005}.
CC -!- DOMAIN: ValRS has two distinct active sites: one for aminoacylation and
CC one for editing. The misactivated threonine is translocated from the
CC active site to the editing site. {ECO:0000255|HAMAP-Rule:MF_02005}.
CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase family.
CC ValS type 2 subfamily. {ECO:0000255|HAMAP-Rule:MF_02005}.
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DR EMBL; AJ235272; CAA15124.1; -; Genomic_DNA.
DR PIR; B71675; B71675.
DR RefSeq; NP_221048.1; NC_000963.1.
DR RefSeq; WP_004599517.1; NC_000963.1.
DR AlphaFoldDB; Q9ZCN6; -.
DR SMR; Q9ZCN6; -.
DR STRING; 272947.RP687; -.
DR EnsemblBacteria; CAA15124; CAA15124; CAA15124.
DR KEGG; rpr:RP687; -.
DR PATRIC; fig|272947.5.peg.709; -.
DR eggNOG; COG0525; Bacteria.
DR HOGENOM; CLU_001493_0_2_5; -.
DR OMA; RQWYIRN; -.
DR Proteomes; UP000002480; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004832; F:valine-tRNA ligase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006438; P:valyl-tRNA aminoacylation; IEA:UniProtKB-UniRule.
DR CDD; cd07962; Anticodon_Ia_Val; 1.
DR Gene3D; 3.40.50.620; -; 2.
DR HAMAP; MF_02005; Val_tRNA_synth_type2; 1.
DR InterPro; IPR001412; aa-tRNA-synth_I_CS.
DR InterPro; IPR002300; aa-tRNA-synth_Ia.
DR InterPro; IPR033705; Anticodon_Ia_Val.
DR InterPro; IPR013155; M/V/L/I-tRNA-synth_anticd-bd.
DR InterPro; IPR014729; Rossmann-like_a/b/a_fold.
DR InterPro; IPR009080; tRNAsynth_Ia_anticodon-bd.
DR InterPro; IPR009008; Val/Leu/Ile-tRNA-synth_edit.
DR InterPro; IPR022874; Valine-tRNA_ligase_type_2.
DR InterPro; IPR002303; Valyl-tRNA_ligase.
DR PANTHER; PTHR11946; PTHR11946; 1.
DR Pfam; PF08264; Anticodon_1; 1.
DR Pfam; PF00133; tRNA-synt_1; 1.
DR PRINTS; PR00986; TRNASYNTHVAL.
DR SUPFAM; SSF47323; SSF47323; 1.
DR SUPFAM; SSF50677; SSF50677; 1.
DR TIGRFAMs; TIGR00422; valS; 1.
DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1.
PE 3: Inferred from homology;
KW Aminoacyl-tRNA synthetase; ATP-binding; Cytoplasm; Ligase;
KW Nucleotide-binding; Protein biosynthesis; Reference proteome.
FT CHAIN 1..814
FT /note="Valine--tRNA ligase"
FT /id="PRO_0000106246"
FT MOTIF 46..56
FT /note="'HIGH' region"
FT MOTIF 536..540
FT /note="'KMSKS' region"
FT BINDING 539
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_02005"
SQ SEQUENCE 814 AA; 94516 MW; E2BF221D8AA167E0 CRC64;
MKEFPKHYNF TENEKKWQNI WQELQIYAYD PNISKAEIYI VDTPPPTVSG QLHIGHIYSY
TQTDFIVRFQ RMIGKNIFYP IGFDDNGLPT ERLVEKQKQI KAYNMERDEF IKICLEVVKN
EEAKFRSLFK QIALSVDWSL EYQTISPLSR KISQMSFLDL LHKGEVYRAN QPILWDTVDG
TALAQADIED KQKISSMNYI TFKTEQGDQL TIATTRPELL PACVAVFYHP DDVRYKHLAD
KSAITPLFNE KVPILADPLV QQDKGTGLVM CCTFGDQTDI TWWKSHNLPL KTIITKKGTI
NFPHKLDIDG LTIKEARTKI IDILKEQSLL TKQEEIIQTV KCAERSGAPL EILTVTQWFI
KTITHKEALL KRTNELNWYP KNMKMRLENW INSLSWDWCI SRQRYFGVPF PIWYSKRIGE
EGKILYADIS QLPVDPLKDL PIGYSKEEVD PDLDVMDTWA TSSVSPQLST YGISEDLAIN
KVRHDKLFPM DLRPQAHEII RTWAFYTILK SHLHQNILPW KNIMVSGWCL AEDRSKMSKS
KGNVLVPEKL LERYGADVIR YWSANSKLGA DTAYSEDVMK NGKRLVNKLW NAAKFVSIHF
DKLTSEDKKV SLFDIKEKIT NEFDQWMINK LVALVKLATN ALQNYEYANA IYLTEKFFWS
IFCDNYLEIS KTRSYDEANK NPQGQYSSIL TLYHIMQTLL KLFAPFMPHI TEELYQILYN
KNSIHMQGNW INYGDLNYEI DVQGPEGLLE ILDIVRKFKA EYNLSIKAPI KLLEVSGIVL
STELVEDLKN VTSAEEIQFK AKDDQIKVNI KLFV