SYV_THEFY
ID SYV_THEFY Reviewed; 881 AA.
AC Q47NK0;
DT 07-MAR-2006, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2005, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Valine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_02005};
DE EC=6.1.1.9 {ECO:0000255|HAMAP-Rule:MF_02005};
DE AltName: Full=Valyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_02005};
DE Short=ValRS {ECO:0000255|HAMAP-Rule:MF_02005};
GN Name=valS {ECO:0000255|HAMAP-Rule:MF_02005}; OrderedLocusNames=Tfu_1936;
OS Thermobifida fusca (strain YX).
OC Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae;
OC Thermobifida.
OX NCBI_TaxID=269800;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=YX;
RX PubMed=17209016; DOI=10.1128/jb.01899-06;
RA Lykidis A., Mavromatis K., Ivanova N., Anderson I., Land M., DiBartolo G.,
RA Martinez M., Lapidus A., Lucas S., Copeland A., Richardson P., Wilson D.B.,
RA Kyrpides N.;
RT "Genome sequence and analysis of the soil cellulolytic actinomycete
RT Thermobifida fusca YX.";
RL J. Bacteriol. 189:2477-2486(2007).
CC -!- FUNCTION: Catalyzes the attachment of valine to tRNA(Val). As ValRS can
CC inadvertently accommodate and process structurally similar amino acids
CC such as threonine, to avoid such errors, it has a 'posttransfer'
CC editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-
CC dependent manner. {ECO:0000255|HAMAP-Rule:MF_02005}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + L-valine + tRNA(Val) = AMP + diphosphate + L-valyl-
CC tRNA(Val); Xref=Rhea:RHEA:10704, Rhea:RHEA-COMP:9672, Rhea:RHEA-
CC COMP:9708, ChEBI:CHEBI:30616, ChEBI:CHEBI:33019, ChEBI:CHEBI:57762,
CC ChEBI:CHEBI:78442, ChEBI:CHEBI:78537, ChEBI:CHEBI:456215; EC=6.1.1.9;
CC Evidence={ECO:0000255|HAMAP-Rule:MF_02005};
CC -!- SUBUNIT: Monomer. {ECO:0000255|HAMAP-Rule:MF_02005}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_02005}.
CC -!- DOMAIN: ValRS has two distinct active sites: one for aminoacylation and
CC one for editing. The misactivated threonine is translocated from the
CC active site to the editing site. {ECO:0000255|HAMAP-Rule:MF_02005}.
CC -!- SIMILARITY: Belongs to the class-I aminoacyl-tRNA synthetase family.
CC ValS type 2 subfamily. {ECO:0000255|HAMAP-Rule:MF_02005}.
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DR EMBL; CP000088; AAZ55969.1; -; Genomic_DNA.
DR AlphaFoldDB; Q47NK0; -.
DR SMR; Q47NK0; -.
DR STRING; 269800.Tfu_1936; -.
DR PRIDE; Q47NK0; -.
DR EnsemblBacteria; AAZ55969; AAZ55969; Tfu_1936.
DR KEGG; tfu:Tfu_1936; -.
DR eggNOG; COG0525; Bacteria.
DR HOGENOM; CLU_001493_0_2_11; -.
DR OMA; RQWYIRN; -.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004832; F:valine-tRNA ligase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006438; P:valyl-tRNA aminoacylation; IEA:UniProtKB-UniRule.
DR CDD; cd07962; Anticodon_Ia_Val; 1.
DR Gene3D; 3.40.50.620; -; 2.
DR HAMAP; MF_02005; Val_tRNA_synth_type2; 1.
DR InterPro; IPR001412; aa-tRNA-synth_I_CS.
DR InterPro; IPR002300; aa-tRNA-synth_Ia.
DR InterPro; IPR033705; Anticodon_Ia_Val.
DR InterPro; IPR013155; M/V/L/I-tRNA-synth_anticd-bd.
DR InterPro; IPR014729; Rossmann-like_a/b/a_fold.
DR InterPro; IPR009080; tRNAsynth_Ia_anticodon-bd.
DR InterPro; IPR009008; Val/Leu/Ile-tRNA-synth_edit.
DR InterPro; IPR022874; Valine-tRNA_ligase_type_2.
DR InterPro; IPR002303; Valyl-tRNA_ligase.
DR PANTHER; PTHR11946; PTHR11946; 1.
DR Pfam; PF08264; Anticodon_1; 1.
DR Pfam; PF00133; tRNA-synt_1; 1.
DR PRINTS; PR00986; TRNASYNTHVAL.
DR SUPFAM; SSF47323; SSF47323; 1.
DR SUPFAM; SSF50677; SSF50677; 1.
DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1.
PE 3: Inferred from homology;
KW Aminoacyl-tRNA synthetase; ATP-binding; Cytoplasm; Ligase;
KW Nucleotide-binding; Protein biosynthesis.
FT CHAIN 1..881
FT /note="Valine--tRNA ligase"
FT /id="PRO_0000224616"
FT REGION 493..526
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOTIF 76..86
FT /note="'HIGH' region"
FT MOTIF 608..612
FT /note="'KMSKS' region"
FT BINDING 611
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_02005"
SQ SEQUENCE 881 AA; 99445 MW; 567C9DBB98C1C8D0 CRC64;
MGCRPRGPRG QAERAGSRCQ YHWPMTNRSR SFNVPDKPSL DGIEAKWVDV WDESGVYHFD
RSKSREEIFA IDTPPPTVSG SLHIGHVFSY THTDTVARFQ RMNGKSVFYP MGWDDNGLPT
ERRVQNYYGV RCDPSIPYDP DFTPPEKPDP KNQVPISRRN FIELCERLTV EDEKVFESIW
RRLGLSVDWR YTYATIDDKS RAVAQRAFLR NLARGEAYMA EAPTLWDVTF RTAVAQAELE
DRERPGAYHK VAFHRDGGDP IIIATTRPEL LPACVALVAH PDDERYQSLF GTTVRSPLFG
VEVPVVAHRL ADPEKGTGIA MICTFGDVTD VTWWRELKLP TRAIIGWDGR IVADPPEGLD
SEEGRAAYAK LAGATVHTAR QRIVEMLRES GDLIGEPEKI THPVKFFEKG DKPLEIVTTR
QWYIRNGGRD PELREALLKR GQELDWYPEH MRTRFEHWVG GLNGDWLISR QRFFGVPFPV
WYPLDDKGNP IYDSPILPDE SQLPVDPSSQ APEGYTEDQR GKPGGFIGDP DVMDTWATSS
LTPQIAGGWE SDPDLFERVF PMDLRPQGQD IIRTWLFSTV VRSHFEHDCL PWKKAAISGW
ILDPDRKKMS KSKGNVVTPL SMLEKYSSDA VRYWAASGRL GTDTALDEKQ MKIGRRLAIK
ILNASKFALS VAGEDTVADP AAVTEPLDRS MLAVLAEVVQ DATAAFHEYD HTRALERTER
FFWNLCDDYL ELVKARAYDP ESREGASARA ALLIALSVLH RLFAPFLPFV TEEVWSWWQD
GSVHVAKWPS VEEFRAAAEA GDPAVLAATS EVLHTVRKAK SEAKLSMRAE VERVTVHGKQ
AEQARLCRDD LAAAGRVTTL VFETTDDAEL RVDVELAPAE K