BPA1_ARATH
ID BPA1_ARATH Reviewed; 259 AA.
AC Q9LFD5; A8MQX8; A8MSB5; C0Z220; Q93Z43;
DT 01-APR-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 142.
DE RecName: Full=Binding partner of ACD11 1 {ECO:0000303|PubMed:18845362};
GN Name=BPA1; OrderedLocusNames=At5g16840 {ECO:0000312|Araport:AT5G16840};
GN ORFNames=F5E19.180 {ECO:0000312|EMBL:CAC01848.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|Proteomes:UP000006548};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4).
RC STRAIN=cv. Columbia;
RX PubMed=19423640; DOI=10.1093/dnares/dsp009;
RA Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
RA Shinozaki K.;
RT "Analysis of multiple occurrences of alternative splicing events in
RT Arabidopsis thaliana using novel sequenced full-length cDNAs.";
RL DNA Res. 16:155-164(2009).
RN [5]
RP INTERACTION WITH ACD11; PR1F2 AND PR1F3, SUBCELLULAR LOCATION, AND
RP DISRUPTION PHENOTYPE.
RX PubMed=18845362; DOI=10.1016/j.jplph.2008.08.003;
RA Petersen N.H., Joensen J., McKinney L.V., Brodersen P., Petersen M.,
RA Hofius D., Mundy J.;
RT "Identification of proteins interacting with Arabidopsis ACD11.";
RL J. Plant Physiol. 166:661-666(2009).
CC -!- SUBUNIT: Interacts with ACD11, PR1F2 and PR1F3 (PubMed:18845362).
CC {ECO:0000269|PubMed:18845362}.
CC -!- INTERACTION:
CC Q9LFD5; O64587: ACD11; NbExp=4; IntAct=EBI-2010933, EBI-2010923;
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:18845362}. Membrane
CC {ECO:0000269|PubMed:18845362}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=4;
CC Name=1;
CC IsoId=Q9LFD5-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9LFD5-2; Sequence=VSP_057557;
CC Name=3;
CC IsoId=Q9LFD5-3; Sequence=VSP_057556;
CC Name=4;
CC IsoId=Q9LFD5-4; Sequence=VSP_057555;
CC -!- DISRUPTION PHENOTYPE: No visible phenotype.
CC {ECO:0000305|PubMed:18845362}.
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DR EMBL; AL391147; CAC01848.1; -; Genomic_DNA.
DR EMBL; CP002688; AED92346.1; -; Genomic_DNA.
DR EMBL; CP002688; AED92347.1; -; Genomic_DNA.
DR EMBL; CP002688; AED92348.1; -; Genomic_DNA.
DR EMBL; AY058146; AAL25562.1; -; mRNA.
DR EMBL; AY094058; AAM16214.1; -; mRNA.
DR EMBL; AK318634; BAH56749.1; -; mRNA.
DR PIR; T51516; T51516.
DR RefSeq; NP_001078595.1; NM_001085126.1. [Q9LFD5-2]
DR RefSeq; NP_001078596.1; NM_001085127.1. [Q9LFD5-3]
DR RefSeq; NP_197186.1; NM_121690.4. [Q9LFD5-1]
DR AlphaFoldDB; Q9LFD5; -.
DR SMR; Q9LFD5; -.
DR IntAct; Q9LFD5; 7.
DR STRING; 3702.AT5G16840.2; -.
DR iPTMnet; Q9LFD5; -.
DR PaxDb; Q9LFD5; -.
DR PRIDE; Q9LFD5; -.
DR ProteomicsDB; 240804; -. [Q9LFD5-1]
DR EnsemblPlants; AT5G16840.1; AT5G16840.1; AT5G16840. [Q9LFD5-1]
DR EnsemblPlants; AT5G16840.2; AT5G16840.2; AT5G16840. [Q9LFD5-2]
DR EnsemblPlants; AT5G16840.3; AT5G16840.3; AT5G16840. [Q9LFD5-3]
DR GeneID; 831547; -.
DR Gramene; AT5G16840.1; AT5G16840.1; AT5G16840. [Q9LFD5-1]
DR Gramene; AT5G16840.2; AT5G16840.2; AT5G16840. [Q9LFD5-2]
DR Gramene; AT5G16840.3; AT5G16840.3; AT5G16840. [Q9LFD5-3]
DR KEGG; ath:AT5G16840; -.
DR Araport; AT5G16840; -.
DR TAIR; locus:2148970; AT5G16840.
DR eggNOG; ENOG502S19D; Eukaryota.
DR OMA; HAQENTA; -.
DR OrthoDB; 1191882at2759; -.
DR PhylomeDB; Q9LFD5; -.
DR PRO; PR:Q9LFD5; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LFD5; baseline and differential.
DR Genevisible; Q9LFD5; AT.
DR GO; GO:0005886; C:plasma membrane; IDA:TAIR.
DR GO; GO:0009536; C:plastid; HDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0050832; P:defense response to fungus; IMP:TAIR.
DR GO; GO:0034051; P:negative regulation of plant-type hypersensitive response; IMP:TAIR.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR Pfam; PF00076; RRM_1; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF54928; SSF54928; 1.
DR PROSITE; PS50102; RRM; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; Cytoplasm; Membrane; Reference proteome; RNA-binding.
FT CHAIN 1..259
FT /note="Binding partner of ACD11 1"
FT /id="PRO_0000432647"
FT DOMAIN 6..77
FT /note="RRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT REGION 219..259
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 232..259
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 1..106
FT /note="Missing (in isoform 4)"
FT /id="VSP_057555"
FT VAR_SEQ 1..4
FT /note="MASQ -> MA (in isoform 3)"
FT /id="VSP_057556"
FT VAR_SEQ 38
FT /note="Q -> QS (in isoform 2)"
FT /id="VSP_057557"
FT CONFLICT 63
FT /note="A -> P (in Ref. 3; AAL25562/AAM16214)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 259 AA; 27234 MW; ECDEE2F498D0CC34 CRC64;
MASQVRSVKV GNLSSGATEH DIKEFFSFSG EVESIDIQSN EHSAYVTFKE TQGAETAVLL
SGASIADQSV IIELAPNYSP PAAPHAETQS SGAESVVQKA EDVVSSMLAK GFILGKDAVG
KAKAFDEKHG FTSTATAGVA SLDQKIGLSQ KLTAGTSLVN EKIKAVDQNF QVTERTKSVY
AAAEQTVSSA GSAVMKNRYV LTGVSWAAGA FNRVAQAAGE VGQKTKEKVE AEQPSQPAQS
QQQLPEGYSP IHSSEYSKN
