TAF10_ARATH
ID TAF10_ARATH Reviewed; 134 AA.
AC O04173; Q8GY69;
DT 16-OCT-2013, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-1997, sequence version 1.
DT 25-MAY-2022, entry version 142.
DE RecName: Full=Transcription initiation factor TFIID subunit 10;
DE AltName: Full=Protein SALT TOLERANCE DURING GERMINATION 1;
DE AltName: Full=TBP-associated factor 10;
DE Short=AtTAF10;
DE AltName: Full=TBP-associated factor II 15;
GN Name=TAF10; Synonyms=SGT1, TAFII15; OrderedLocusNames=At4g31720;
GN ORFNames=F28M20.90;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], IDENTIFICATION, NOMENCLATURE, AND TISSUE
RP SPECIFICITY.
RX PubMed=15527982; DOI=10.1016/j.gene.2004.08.023;
RA Lago C., Clerici E., Mizzi L., Colombo L., Kater M.M.;
RT "TBP-associated factors in Arabidopsis.";
RL Gene 342:231-241(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA], SUBUNIT, AND INTERACTION WITH TAF4; TAF4B;
RP TAF8; TAF9; TAF12B AND TAF13.
RC STRAIN=cv. Columbia;
RX PubMed=17340043; DOI=10.1007/s11103-007-9135-1;
RA Lawit S.J., O'Grady K., Gurley W.B., Czarnecka-Verner E.;
RT "Yeast two-hybrid map of Arabidopsis TFIID.";
RL Plant Mol. Biol. 64:73-87(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia; TISSUE=Aerial part;
RA Schwechheimer C.;
RL Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [8]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia; TISSUE=Rosette leaf;
RX PubMed=19423640; DOI=10.1093/dnares/dsp009;
RA Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
RA Shinozaki K.;
RT "Analysis of multiple occurrences of alternative splicing events in
RT Arabidopsis thaliana using novel sequenced full-length cDNAs.";
RL DNA Res. 16:155-164(2009).
RN [9]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [10]
RP FUNCTION.
RC STRAIN=cv. Columbia;
RX PubMed=16945932; DOI=10.1093/pcp/pcj099;
RA Gao X., Ren F., Lu Y.T.;
RT "The Arabidopsis mutant stg1 identifies a function for TBP-associated
RT factor 10 in plant osmotic stress adaptation.";
RL Plant Cell Physiol. 47:1285-1294(2006).
RN [11]
RP FUNCTION, DEVELOPMENTAL STAGE, INDUCTION BY AUXIN AND CYTOKININ, AND TISSUE
RP SPECIFICITY.
RX PubMed=17148695; DOI=10.1093/pcp/pcl048;
RA Tamada Y., Nakamori K., Nakatani H., Matsuda K., Hata S., Furumoto T.,
RA Izui K.;
RT "Temporary expression of the TAF10 gene and its requirement for normal
RT development of Arabidopsis thaliana.";
RL Plant Cell Physiol. 48:134-146(2007).
CC -!- FUNCTION: TAFs are components of the transcription factor IID (TFIID)
CC complex that is essential for mediating regulation of RNA polymerase
CC transcription. Involved in osmotic stress adaptation during the
CC germination stage and in gene expression related to meristem activity
CC and leaf development. {ECO:0000269|PubMed:16945932,
CC ECO:0000269|PubMed:17148695}.
CC -!- SUBUNIT: Component of the TFIID complex. TFIID is composed of TATA
CC binding protein (TBP) and a number of TBP-associated factors (TAFs)
CC whose MWs range from 14-217 kDa. Can homodimerize. Interacts with TAF4,
CC TAF4B, TAF8, TAF9, TAF12B and TAF13. {ECO:0000269|PubMed:17340043}.
CC -!- INTERACTION:
CC O04173; F4HVA6: TAF6B; NbExp=3; IntAct=EBI-1247479, EBI-1245557;
CC O04173; Q9SYZ9: TAF8; NbExp=3; IntAct=EBI-1247479, EBI-1247615;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, stems, leaves and
CC inflorescences. Expressed preferentially in the vascular bundles and
CC bundle sheath cells of cotyledons, the phloem of hypocotyls and the
CC central cylinders of roots. {ECO:0000269|PubMed:15527982,
CC ECO:0000269|PubMed:17148695}.
CC -!- DEVELOPMENTAL STAGE: Expressed transiently during the development of
CC several organs such as lateral roots, rosette leaves and most floral
CC organs. {ECO:0000269|PubMed:17148695}.
CC -!- INDUCTION: Up-regulated by auxin and cytokinin.
CC {ECO:0000269|PubMed:17148695}.
CC -!- MISCELLANEOUS: Overexpression of TAF10 results in salt tolerance during
CC seed germination while knock-down mutants are more sensitive to osmotic
CC stress (PubMed:16945932) and display several abnormal phenotypes
CC involved in meristem activity and leaf development (PubMed:17148695).
CC {ECO:0000305|PubMed:16945932, ECO:0000305|PubMed:17148695}.
CC -!- SIMILARITY: Belongs to the TAF10 family. {ECO:0000305}.
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DR EMBL; AY463628; AAR28030.1; -; mRNA.
DR EMBL; AF352813; AAK29671.1; -; mRNA.
DR EMBL; AF344879; AAK28290.1; -; mRNA.
DR EMBL; Y12904; CAA73389.1; -; mRNA.
DR EMBL; AL031004; CAA19751.1; -; Genomic_DNA.
DR EMBL; AL161579; CAB79890.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE85949.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE85950.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM67738.1; -; Genomic_DNA.
DR EMBL; AK117827; BAC42469.1; -; mRNA.
DR EMBL; BT004724; AAO42970.1; -; mRNA.
DR EMBL; AK317292; BAH19968.1; -; mRNA.
DR EMBL; AY086560; AAM63623.1; -; mRNA.
DR PIR; T05098; T05098.
DR RefSeq; NP_001329548.1; NM_001342109.1.
DR RefSeq; NP_194900.1; NM_119321.4.
DR RefSeq; NP_849481.1; NM_179150.4.
DR AlphaFoldDB; O04173; -.
DR SMR; O04173; -.
DR BioGRID; 14586; 17.
DR IntAct; O04173; 16.
DR STRING; 3702.AT4G31720.1; -.
DR iPTMnet; O04173; -.
DR PaxDb; O04173; -.
DR PRIDE; O04173; -.
DR ProteomicsDB; 234120; -.
DR EnsemblPlants; AT4G31720.1; AT4G31720.1; AT4G31720.
DR EnsemblPlants; AT4G31720.2; AT4G31720.2; AT4G31720.
DR EnsemblPlants; AT4G31720.3; AT4G31720.3; AT4G31720.
DR GeneID; 829300; -.
DR Gramene; AT4G31720.1; AT4G31720.1; AT4G31720.
DR Gramene; AT4G31720.2; AT4G31720.2; AT4G31720.
DR Gramene; AT4G31720.3; AT4G31720.3; AT4G31720.
DR KEGG; ath:AT4G31720; -.
DR Araport; AT4G31720; -.
DR TAIR; locus:2124884; AT4G31720.
DR eggNOG; KOG3423; Eukaryota.
DR HOGENOM; CLU_064104_4_1_1; -.
DR InParanoid; O04173; -.
DR OMA; TMHALKT; -.
DR OrthoDB; 1478962at2759; -.
DR PhylomeDB; O04173; -.
DR PRO; PR:O04173; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; O04173; baseline and differential.
DR Genevisible; O04173; AT.
DR GO; GO:0000124; C:SAGA complex; IBA:GO_Central.
DR GO; GO:0005669; C:transcription factor TFIID complex; IBA:GO_Central.
DR GO; GO:1990841; F:promoter-specific chromatin binding; IBA:GO_Central.
DR GO; GO:0016573; P:histone acetylation; IBA:GO_Central.
DR GO; GO:0006367; P:transcription initiation from RNA polymerase II promoter; IBA:GO_Central.
DR CDD; cd07982; TAF10; 1.
DR InterPro; IPR003923; TFIID_30kDa.
DR PANTHER; PTHR21242; PTHR21242; 1.
DR Pfam; PF03540; TFIID_30kDa; 1.
DR PIRSF; PIRSF017246; TFIID_TAF10; 1.
DR PRINTS; PR01443; TFIID30KDSUB.
PE 1: Evidence at protein level;
KW Activator; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..134
FT /note="Transcription initiation factor TFIID subunit 10"
FT /id="PRO_0000424047"
FT CONFLICT 130
FT /note="A -> V (in Ref. 6; BAC42469 and 7; AAO42970)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 134 AA; 14913 MW; 30DA497C90074D3B CRC64;
MNHGQQSGEA KHEDDAALTE FLASLMDYTP TIPDDLVEHY LAKSGFQCPD VRLIRLVAVA
TQKFVADVAS DALQHCKARP APVVKDKKQQ KDKRLVLTME DLSKALREYG VNVKHPEYFA
DSPSTGMDPA TRDE
