TAF1_ORYSJ
ID TAF1_ORYSJ Reviewed; 1810 AA.
AC Q67W65;
DT 09-JAN-2007, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=Transcription initiation factor TFIID subunit 1;
DE AltName: Full=TAFII250;
GN Name=TAF1; OrderedLocusNames=Os06g0645700, LOC_Os06g43790;
GN ORFNames=OJ1226_A12.6, P0017B12.32;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 758-1637.
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Largest component and core scaffold of the TFIID basal
CC transcription factor complex. {ECO:0000250}.
CC -!- SUBUNIT: TAF1 is the largest component of transcription factor TFIID
CC that is composed of TBP and a variety of TBP-associated factors.
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the TAF1 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AK064421; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AP003568; BAD37451.1; -; Genomic_DNA.
DR EMBL; AP004008; BAD37604.1; -; Genomic_DNA.
DR EMBL; AP014962; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AK064421; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015643265.1; XM_015787779.1.
DR AlphaFoldDB; Q67W65; -.
DR SMR; Q67W65; -.
DR STRING; 4530.OS06T0645800-01; -.
DR PaxDb; Q67W65; -.
DR PRIDE; Q67W65; -.
DR GeneID; 9266475; -.
DR KEGG; osa:9266475; -.
DR eggNOG; KOG0008; Eukaryota.
DR InParanoid; Q67W65; -.
DR OrthoDB; 103411at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q67W65; OS.
DR GO; GO:0005669; C:transcription factor TFIID complex; IBA:GO_Central.
DR GO; GO:0004402; F:histone acetyltransferase activity; IEA:InterPro.
DR GO; GO:0016251; F:RNA polymerase II general transcription initiation factor activity; IBA:GO_Central.
DR GO; GO:0001091; F:RNA polymerase II general transcription initiation factor binding; IEA:InterPro.
DR GO; GO:0017025; F:TBP-class protein binding; IBA:GO_Central.
DR GO; GO:0006325; P:chromatin organization; IEA:UniProtKB-KW.
DR GO; GO:0051123; P:RNA polymerase II preinitiation complex assembly; IBA:GO_Central.
DR Gene3D; 1.20.920.10; -; 1.
DR InterPro; IPR001487; Bromodomain.
DR InterPro; IPR036427; Bromodomain-like_sf.
DR InterPro; IPR018359; Bromodomain_CS.
DR InterPro; IPR040240; TAF1.
DR InterPro; IPR022591; TAF1_HAT_dom.
DR InterPro; IPR009067; TAF_II_230-bd.
DR InterPro; IPR036741; TAFII-230_TBP-bd_sf.
DR InterPro; IPR000626; Ubiquitin-like_dom.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR PANTHER; PTHR13900; PTHR13900; 1.
DR Pfam; PF00439; Bromodomain; 1.
DR Pfam; PF12157; DUF3591; 1.
DR Pfam; PF09247; TBP-binding; 1.
DR Pfam; PF00240; ubiquitin; 1.
DR PRINTS; PR00503; BROMODOMAIN.
DR SMART; SM00297; BROMO; 1.
DR SMART; SM00213; UBQ; 1.
DR SUPFAM; SSF47055; SSF47055; 1.
DR SUPFAM; SSF47370; SSF47370; 1.
DR SUPFAM; SSF54236; SSF54236; 1.
DR PROSITE; PS00633; BROMODOMAIN_1; 1.
DR PROSITE; PS50014; BROMODOMAIN_2; 1.
DR PROSITE; PS50053; UBIQUITIN_2; 1.
PE 2: Evidence at transcript level;
KW Activator; Bromodomain; Chromatin regulator; Coiled coil; Nucleus;
KW Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..1810
FT /note="Transcription initiation factor TFIID subunit 1"
FT /id="PRO_0000269755"
FT DOMAIN 636..712
FT /note="Ubiquitin-like"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00214"
FT DOMAIN 1709..1779
FT /note="Bromo"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00035"
FT REGION 1..38
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 413..454
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1261..1291
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1493..1609
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1632..1692
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 1240..1260
FT /evidence="ECO:0000255"
FT COILED 1627..1647
FT /evidence="ECO:0000255"
FT COMPBIAS 421..454
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1272..1290
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1517..1531
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1544..1572
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1645..1677
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1810 AA; 204275 MW; 6D54BE5F496FA6BB CRC64;
MGDGERREDE NPTTSAADDD DDEDYDEPGG GNHFLGFMFG NVDDSGDLDA DYLDEDAKEH
LFALADKLGP SLKDIDLIKP SAAPTDPSEQ DYDAKAEDAV DYEDIDEEYD GPEVEAATEE
DHLLSKKDYF SSNAVYASVN SKVSVFDEEN YDEDEEPPND NDLPSDNIVQ NCTSASAEQL
DMAPSNDNLA VEKMSSSLSE PEESFESEAF QKEMVAEEQL ESKTATSLPV LCIEDGSVIL
KFSEIFGAQE PVRKAKMDRH KRPVNKELQI TNFTDIVEED EEVFLRSTIQ NLSALKHIKT
NDNFVESDSD ESTSDVALRL KDSCLSEQPM KDKDIPTAVQ SPVFPDFYPL EHENWENDIV
WGNSPTTAIQ PCLTSCAISK ESLDDHNEDQ AEGYVSGCWD VQNKFHSSSV MADPFGHTEI
PDSTSYRSPE NSYSPLRKET AQENNSLDEP NNITQPVKID TTRHLNKLSL LNKELLEGSW
LDNIVWDPSE DVPKPKLIFD LKDDHMLFEI LDEKNGDHLR SHARAMIVTR PMKTSAVENV
DHNNQAIALS GRFNISNDKF YSNRKMSQQA RSHAKKRATM GLKLVHSVPA QKLQTMKPKL
SIKEIANFHR PKAKWYPHEN KLTARFQGDE CSHGPMTAIV MTLGGKGVKF LVNAEETPLS
VKSKASKKLE FKPSEKIKLF CSGKELQDDI SLAMQNVRPN SILHVVRTEI HLWPKAQRLP
GENKPLRPPG AFRKKSDLSV KDGHVFLMEY CEERPLLLAN AGMAARLCTY YQKTSPSDQT
ATSLRSNSDG LGTMLAIDPA DKSPFLGNIR SGSHQSCLET NMYRAPVFPH KVATTDYLLV
RSPKGMLSLR RIDKLYAVGQ QEPHMEVFSP GTKNMQNYIL NRILVYVYRE FRAREKPGII
PQIRADELPI QPPITEAIVR KRLKHCADLR KGPKGHLFYI QRPDFRIPSE EELRRLLTPE
NVCCYESMQA GQYRLKHLGI EKLTQPVGLA SAMNQLPDEA IELAAAAHIE RELQITSWNL
TSNFVACTNQ DKENIERLEI TGVGDPSGRG LGFSYVRVTP KAPVSNSTHK KKSAAAKGTT
VTGTDADLRR LSMDAARELL LKFGVPEEQI DKLTRWHRIA MVRKLSSEQA ASGVTMDEIP
VSKFARGQRM SFLQLQQQTK EKCQEIWDRQ IQSLSAMDGN ENGSDTEANS DLDSFAGDLE
NLLDAEEFDD EDVGNTDIRS DKMDGMRGLK MRRCHTQSQI NEEIQDDVAE AALVEKLLEE
SDSDMKRKKQ PVETTNYSTP MYNQGNKMKQ GKAGQMIKSS VYAGALTPKE SIPREAKEVE
NFAEGSLPSK LRTKTGFDAN DDIILVKRKN IPGKDGFKEK RQGARGDTLV CGACGQLGHM
RTNKLCPKYG EDPETSEMDV NSIRSHPPDI VSNAQIKTSN KRLVAKVSSE AFETEGPESI
EKAKPVPVKF KCGAPEKSLD RNMSISASLV SDKRMMDATD SKSTGKVNKI KISNKIKYDD
YPPDTPKPSV VIRPPAEVEK DLPRKKIIIK QPKVLGDQQR PTELRSGQEP RKTRKIVELS
SFEKRDREDD NGFSGQPIQI NSSHDRGWGL VGKRSKGIME SSESWRAFEE QRERQEQRLI
EARIYDARRE DELQKAKKKN KKKKKHEFRD DDLLDPRPYK NDRRVPERGR AAKRRTPADM
TEYTPPAKRH RGGEVELSNI LEKIVDHLRT MSCSFLFRKP VTKKEAPDYF DIIERPMDLG
TIRDKVRKME YKNREDFRHD VAQIALNAHT YNLNRHPHIP PLADELLELC DYLLEESADV
LDDAEYAIED
