TAF7_ARATH
ID TAF7_ARATH Reviewed; 239 AA.
AC B9DG24; Q9C8A0;
DT 16-OCT-2013, integrated into UniProtKB/Swiss-Prot.
DT 03-MAY-2011, sequence version 1.
DT 03-AUG-2022, entry version 58.
DE RecName: Full=Transcription initiation factor TFIID subunit 7;
DE AltName: Full=TBP-associated factor 7;
DE Short=AtTAF7;
GN Name=TAF7; OrderedLocusNames=At1g55300; ORFNames=F7A10.3;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], IDENTIFICATION, NOMENCLATURE, AND TISSUE
RP SPECIFICITY.
RX PubMed=15527982; DOI=10.1016/j.gene.2004.08.023;
RA Lago C., Clerici E., Mizzi L., Colombo L., Kater M.M.;
RT "TBP-associated factors in Arabidopsis.";
RL Gene 342:231-241(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), INTERACTION WITH TAF1, AND
RP INDUCTION BY HEAT.
RC STRAIN=cv. Columbia;
RX PubMed=17340043; DOI=10.1007/s11103-007-9135-1;
RA Lawit S.J., O'Grady K., Gurley W.B., Czarnecka-Verner E.;
RT "Yeast two-hybrid map of Arabidopsis TFIID.";
RL Plant Mol. Biol. 64:73-87(2007).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RA Cheuk R., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Columbia;
RX PubMed=19423640; DOI=10.1093/dnares/dsp009;
RA Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
RA Shinozaki K.;
RT "Analysis of multiple occurrences of alternative splicing events in
RT Arabidopsis thaliana using novel sequenced full-length cDNAs.";
RL DNA Res. 16:155-164(2009).
CC -!- FUNCTION: TAFs are components of the transcription factor IID (TFIID)
CC complex that is essential for mediating regulation of RNA polymerase
CC transcription. {ECO:0000250}.
CC -!- SUBUNIT: Component of the TFIID complex. TFIID is composed of TATA
CC binding protein (TBP) and a number of TBP-associated factors (TAFs)
CC whose MWs range from 14-217 kDa. Interacts with TAF1.
CC {ECO:0000269|PubMed:17340043}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=B9DG24-1; Sequence=Displayed;
CC Name=2;
CC IsoId=B9DG24-2; Sequence=VSP_053306, VSP_053307;
CC -!- TISSUE SPECIFICITY: Expressed in roots, leaves and inflorescences.
CC {ECO:0000269|PubMed:15527982}.
CC -!- INDUCTION: Up-regulated by heat shock. {ECO:0000269|PubMed:17340043}.
CC -!- SIMILARITY: Belongs to the TAF7 family. {ECO:0000305}.
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DR EMBL; AY463622; AAR28024.1; -; mRNA.
DR EMBL; AC027034; AAG51559.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33220.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33221.1; -; Genomic_DNA.
DR EMBL; BT011002; AAR25638.1; -; mRNA.
DR EMBL; BT015099; AAT71971.1; -; mRNA.
DR EMBL; AK316996; BAH19691.1; -; mRNA.
DR EMBL; AK316930; BAH19635.1; -; mRNA.
DR PIR; A96595; A96595.
DR RefSeq; NP_001031194.1; NM_001036117.1. [B9DG24-1]
DR RefSeq; NP_175926.1; NM_104405.4. [B9DG24-2]
DR AlphaFoldDB; B9DG24; -.
DR SMR; B9DG24; -.
DR BioGRID; 27200; 3.
DR IntAct; B9DG24; 2.
DR STRING; 3702.AT1G55300.2; -.
DR PaxDb; B9DG24; -.
DR PRIDE; B9DG24; -.
DR ProteomicsDB; 234133; -. [B9DG24-1]
DR EnsemblPlants; AT1G55300.1; AT1G55300.1; AT1G55300. [B9DG24-2]
DR EnsemblPlants; AT1G55300.2; AT1G55300.2; AT1G55300. [B9DG24-1]
DR GeneID; 841975; -.
DR Gramene; AT1G55300.1; AT1G55300.1; AT1G55300. [B9DG24-2]
DR Gramene; AT1G55300.2; AT1G55300.2; AT1G55300. [B9DG24-1]
DR KEGG; ath:AT1G55300; -.
DR Araport; AT1G55300; -.
DR TAIR; locus:2035656; AT1G55300.
DR eggNOG; KOG4011; Eukaryota.
DR HOGENOM; CLU_037860_3_0_1; -.
DR InParanoid; B9DG24; -.
DR OMA; EGIEYTH; -.
DR OrthoDB; 1348389at2759; -.
DR PhylomeDB; B9DG24; -.
DR PRO; PR:B9DG24; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; B9DG24; baseline and differential.
DR Genevisible; B9DG24; AT.
DR GO; GO:0005669; C:transcription factor TFIID complex; IBA:GO_Central.
DR GO; GO:0051123; P:RNA polymerase II preinitiation complex assembly; IBA:GO_Central.
DR CDD; cd08047; TAF7; 1.
DR InterPro; IPR037817; TAF7.
DR InterPro; IPR006751; TAFII55_prot_cons_reg.
DR PANTHER; PTHR12228; PTHR12228; 1.
DR Pfam; PF04658; TAFII55_N; 1.
DR SMART; SM01370; TAFII55_N; 1.
PE 1: Evidence at protein level;
KW Activator; Alternative splicing; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..239
FT /note="Transcription initiation factor TFIID subunit 7"
FT /id="PRO_0000424044"
FT VAR_SEQ 147..203
FT /note="SFSFYFRHMMCLYLLLGFSNFIYLNFFWCRYMSKRNQLRTRMLVMQVRKYLL
FT LHLHL -> HEQEEPATNENASNASKKVSSSSPTPVEKPEAPETGTSNPTGVEPERSES
FT EDSDDSM (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:17340043,
FT ECO:0000303|PubMed:19423640, ECO:0000303|Ref.5"
FT /id="VSP_053306"
FT VAR_SEQ 204..239
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:17340043,
FT ECO:0000303|PubMed:19423640, ECO:0000303|Ref.5"
FT /id="VSP_053307"
SQ SEQUENCE 239 AA; 28085 MW; 49505F3F9A9B1E1F CRC64;
MEEQFILRVP PSVSERIDRL LSEDASTSDE IPLDLFFSED GRNGTFMIGN DEFPASLLDL
PAVVESFKTY DDCALVKTAD IGQMIMVREP GDPAPNTVEY RHGLTPPMKD ARKRRFRREP
DLNPELVQRV ERDLLNILSG GTVENVSFSF YFRHMMCLYL LLGFSNFIYL NFFWCRYMSK
RNQLRTRMLV MQVRKYLLLH LHLLKSLKLL RQALVIQQEL NRREVNQKIL MIQCEFIII
