TB1_ORYSJ
ID TB1_ORYSJ Reviewed; 388 AA.
AC Q8LN68; Q941M8; Q9ATR4;
DT 05-JUL-2017, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2002, sequence version 1.
DT 03-AUG-2022, entry version 118.
DE RecName: Full=Transcription factor TB1 {ECO:0000305};
DE AltName: Full=Protein FINE CULM 1 {ECO:0000303|PubMed:12581309};
DE AltName: Full=Protein TEOSINTE BRANCHED 1 homolog {ECO:0000303|PubMed:12581309};
DE Short=OsTB1 {ECO:0000303|PubMed:12581309};
DE AltName: Full=TCP transcription factor 8 {ECO:0000312|EMBL:AFK65660.1};
DE Short=OsTCP8 {ECO:0000312|EMBL:AFK65660.1};
GN Name=TB1 {ECO:0000303|PubMed:12581309};
GN Synonyms=FC1 {ECO:0000303|PubMed:12581309},
GN TCP8 {ECO:0000312|EMBL:AFK65660.1};
GN OrderedLocusNames=Os03g0706500 {ECO:0000312|EMBL:BAF12942.1},
GN LOC_Os03g49880 {ECO:0000312|EMBL:ABF98462.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION.
RC STRAIN=cv. Nipponbare;
RX PubMed=12581309; DOI=10.1046/j.1365-313x.2003.01648.x;
RA Takeda T., Suwa Y., Suzuki M., Kitano H., Ueguchi-Tanaka M., Ashikari M.,
RA Matsuoka M., Ueguchi C.;
RT "The OsTB1 gene negatively regulates lateral branching in rice.";
RL Plant J. 33:513-520(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Hu W., Zhao Y., Luo D.;
RT "The structural and functional analysis of a Tb1-like gene in rice.";
RL Submitted (JUN-2001) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Dongjin;
RA Yoon I.S., Kim D.Y.;
RT "TCP transcription factor.";
RL Submitted (DEC-2011) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [7]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [8]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [9]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-355.
RX PubMed=11264415; DOI=10.1093/oxfordjournals.molbev.a003843;
RA Lukens L., Doebley J.;
RT "Molecular evolution of the teosinte branched gene among maize and related
RT grasses.";
RL Mol. Biol. Evol. 18:627-638(2001).
RN [10]
RP TISSUE SPECIFICITY.
RX PubMed=17655651; DOI=10.1111/j.1365-313x.2007.03210.x;
RA Arite T., Iwata H., Ohshima K., Maekawa M., Nakajima M., Kojima M.,
RA Sakakibara H., Kyozuka J.;
RT "DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in
RT rice.";
RL Plant J. 51:1019-1029(2007).
RN [11]
RP FUNCTION, TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
RX PubMed=20547591; DOI=10.1093/pcp/pcq083;
RA Minakuchi K., Kameoka H., Yasuno N., Umehara M., Luo L., Kobayashi K.,
RA Hanada A., Ueno K., Asami T., Yamaguchi S., Kyozuka J.;
RT "FINE CULM1 (FC1) works downstream of strigolactones to inhibit the
RT outgrowth of axillary buds in rice.";
RL Plant Cell Physiol. 51:1127-1135(2010).
RN [12]
RP FUNCTION, AND INTERACTION WITH MADS57.
RX PubMed=23463009; DOI=10.1038/ncomms2542;
RA Guo S., Xu Y., Liu H., Mao Z., Zhang C., Ma Y., Zhang Q., Meng Z.,
RA Chong K.;
RT "The interaction between OsMADS57 and OsTB1 modulates rice tillering via
RT DWARF14.";
RL Nat. Commun. 4:1566-1566(2013).
CC -!- FUNCTION: Probable transcription factor that functions as a negative
CC regulator of lateral branching, presumably through its expression in
CC axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine
CC tuning of shoot branching. May function as an integrator of multiple
CC signaling pathways to regulate the development of axillary buds. Works
CC partially downstream of strigolactones to inhibit bud outgrowth
CC (PubMed:20547591). Binds to MADS57 to suppress the negative regulation
CC of D14 by MADS57 and balance the expression of D14 for tillering
CC (PubMed:23463009). {ECO:0000269|PubMed:12581309,
CC ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}.
CC -!- SUBUNIT: Interacts with MADS57. {ECO:0000269|PubMed:23463009}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00701}.
CC -!- TISSUE SPECIFICITY: Expressed in the axillary bud of the first formed
CC leaf node (PubMed:17655651). Expressed in axillary buds, shoot apical
CC meristem, young leaves, vascular tissues and the tips of crown roots
CC (PubMed:20547591). {ECO:0000269|PubMed:17655651,
CC ECO:0000269|PubMed:20547591}.
CC -!- DISRUPTION PHENOTYPE: Increased lateral branching.
CC {ECO:0000269|PubMed:12581309}.
CC -!- MISCELLANEOUS: Plants over-expressing TB1 exhibit markedly reduced
CC lateral branching, but normal propagation of axillary buds.
CC {ECO:0000269|PubMed:12581309}.
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DR EMBL; AB088343; BAC54954.1; -; Genomic_DNA.
DR EMBL; AY043215; AAL05595.1; -; mRNA.
DR EMBL; JQ315157; AFK65660.1; -; mRNA.
DR EMBL; AC091775; AAM97162.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF98462.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12942.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS85980.1; -; Genomic_DNA.
DR EMBL; AK107083; BAG97939.1; -; mRNA.
DR EMBL; AF322143; AAK37505.1; -; Genomic_DNA.
DR RefSeq; XP_015630237.1; XM_015774751.1.
DR AlphaFoldDB; Q8LN68; -.
DR SMR; Q8LN68; -.
DR STRING; 4530.OS03T0706500-01; -.
DR PaxDb; Q8LN68; -.
DR PRIDE; Q8LN68; -.
DR EnsemblPlants; Os03t0706500-01; Os03t0706500-01; Os03g0706500.
DR GeneID; 4333856; -.
DR Gramene; Os03t0706500-01; Os03t0706500-01; Os03g0706500.
DR KEGG; osa:4333856; -.
DR eggNOG; ENOG502QUQ6; Eukaryota.
DR HOGENOM; CLU_058710_0_0_1; -.
DR InParanoid; Q8LN68; -.
DR OMA; DQWELGG; -.
DR OrthoDB; 1495200at2759; -.
DR PlantReactome; R-OSA-5654828; Strigolactone signaling.
DR PlantReactome; R-OSA-9030908; Underwater shoot and internode elongation.
DR PlantReactome; R-OSA-9608575; Reproductive meristem phase change.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0040008; P:regulation of growth; IEA:UniProtKB-KW.
DR GO; GO:2000032; P:regulation of secondary shoot formation; IBA:GO_Central.
DR GO; GO:0048831; P:regulation of shoot system development; IMP:Gramene.
DR InterPro; IPR017888; CYC/TB1_R_domain.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 1.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51370; R; 1.
DR PROSITE; PS51369; TCP; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Growth regulation; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..388
FT /note="Transcription factor TB1"
FT /id="PRO_0000441027"
FT DOMAIN 115..173
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
FT DOMAIN 250..267
FT /note="R"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00702"
FT REGION 180..269
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 289..331
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 181..203
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 210..228
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 243..269
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 294..329
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 47
FT /note="P -> S (in Ref. 2; AAL05595)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 388 AA; 41504 MW; 8CF363D2EAA02743 CRC64;
MLPFFDSPSP MDIPLYQQLQ LTPPSPKPDH HHHHHSTFFY YHHHPPPSPS FPSFPSPAAA
TIASPSPAMH PFMDLELEPH GQQLAAAEED GAGGQGVDAG VPFGVDGAAA AAAARKDRHS
KISTAGGMRD RRMRLSLDVA RKFFALQDML GFDKASKTVQ WLLNMSKAAI REIMSDDASS
VCEEDGSSSL SVDGKQQQHS NPADRGGGAG DHKGAAHGHS DGKKPAKPRR AAANPKPPRR
LANAHPVPDK ESRAKARERA RERTKEKNRM RWVTLASAIS VEAATAAAAA GEDKSPTSPS
NNLNHSSSTN LVSTELEDGS SSTRHNGVGV SGGRMQEISA ASEASDVIMA FANGGAYGDS
GSYYLQQQHQ QDQWELGGVV YANSRHYC
