TBCC1_DANRE
ID TBCC1_DANRE Reviewed; 582 AA.
AC A4QP31; A8WHY2; Q5SQE5;
DT 02-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 22-JUL-2008, sequence version 3.
DT 03-AUG-2022, entry version 74.
DE RecName: Full=TBCC domain-containing protein 1;
GN Name=tbccd1; ORFNames=si:ch211-194d6.5, si:rp71-45g20.12, zgc:162789;
OS Danio rerio (Zebrafish) (Brachydanio rerio).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC Danionidae; Danioninae; Danio.
OX NCBI_TaxID=7955;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Tuebingen;
RX PubMed=23594743; DOI=10.1038/nature12111;
RA Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M.,
RA Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I.,
RA Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.,
RA White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y.,
RA Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B.,
RA Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S.,
RA Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA Clee C., Oliver K., Clark R., Riddle C., Elliot D., Threadgold G.,
RA Harden G., Ware D., Begum S., Mortimore B., Kerry G., Heath P.,
RA Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S.,
RA Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N.,
RA Lloyd C., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J.,
RA Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J.,
RA Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D.,
RA McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S.,
RA Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E.,
RA Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A.,
RA Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P.,
RA Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J.,
RA Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E.,
RA Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C.,
RA Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C.,
RA Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M.,
RA Oberlander M., Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G.,
RA Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F.,
RA Schuster S.C., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M.,
RA Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M.,
RA de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C.,
RA Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.;
RT "The zebrafish reference genome sequence and its relationship to the human
RT genome.";
RL Nature 496:498-503(2013).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Embryo;
RG NIH - Zebrafish Gene Collection (ZGC) project;
RL Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: May play a role in the regulation of centrosome and Golgi
CC apparatus positioning. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton, microtubule organizing
CC center, centrosome {ECO:0000250}. Cytoplasm, cytoskeleton, spindle pole
CC {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the TBCC family. {ECO:0000305}.
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DR EMBL; AL772198; CAI11699.2; -; Genomic_DNA.
DR EMBL; BX511265; CAP19542.1; -; Genomic_DNA.
DR EMBL; BC139633; AAI39634.1; -; mRNA.
DR RefSeq; NP_001038617.2; NM_001045152.2.
DR AlphaFoldDB; A4QP31; -.
DR SMR; A4QP31; -.
DR STRING; 7955.ENSDARP00000064155; -.
DR PaxDb; A4QP31; -.
DR PeptideAtlas; A4QP31; -.
DR GeneID; 100037389; -.
DR CTD; 55171; -.
DR ZFIN; ZDB-GENE-041210-222; tbccd1.
DR eggNOG; KOG4416; Eukaryota.
DR InParanoid; A4QP31; -.
DR OrthoDB; 433967at2759; -.
DR PhylomeDB; A4QP31; -.
DR TreeFam; TF329418; -.
DR PRO; PR:A4QP31; -.
DR Proteomes; UP000000437; Genome assembly.
DR Proteomes; UP000814640; Unplaced.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR GO; GO:0031616; C:spindle pole centrosome; IBA:GO_Central.
DR GO; GO:0051661; P:maintenance of centrosome location; IBA:GO_Central.
DR GO; GO:0051684; P:maintenance of Golgi location; IBA:GO_Central.
DR Gene3D; 2.160.20.70; -; 1.
DR InterPro; IPR017901; C-CAP_CF_C-like.
DR InterPro; IPR016098; CAP/MinC_C.
DR InterPro; IPR006599; CARP_motif.
DR InterPro; IPR039589; TBCC1.
DR InterPro; IPR012945; Tubulin-bd_cofactor_C_dom.
DR PANTHER; PTHR16052; PTHR16052; 1.
DR Pfam; PF07986; TBCC; 1.
DR SMART; SM00673; CARP; 1.
DR PROSITE; PS51329; C_CAP_COFACTOR_C; 1.
PE 2: Evidence at transcript level;
KW Cytoplasm; Cytoskeleton; Reference proteome.
FT CHAIN 1..582
FT /note="TBCC domain-containing protein 1"
FT /id="PRO_0000304948"
FT DOMAIN 305..451
FT /note="C-CAP/cofactor C-like"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00659"
FT REGION 140..159
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 547..582
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 144..159
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 312
FT /note="L -> V (in Ref. 1; CAP19542)"
FT /evidence="ECO:0000305"
FT CONFLICT 390
FT /note="I -> R (in Ref. 2; AAI39634)"
FT /evidence="ECO:0000305"
FT CONFLICT 485
FT /note="I -> S (in Ref. 1; CAI11699)"
FT /evidence="ECO:0000305"
FT CONFLICT 576
FT /note="Q -> H (in Ref. 2; AAI39634)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 582 AA; 65778 MW; CD5B28A8A739E218 CRC64;
MDKYTAYVWP RLEPFLVGVL PATPPSKFSM HYLRKMASYV RTRDGCFPRL GWQMWRHIAC
GKLQLAEDLA WLYFETFDLL MPRSAEQRLE WAEALSQCHT QKELDRQRCK LSVDTLQFLL
FLYLQQLNRI SLRTSLIGEE WPSPRSRSPS SSSSERDAKI SSQNKNWDVQ AHLTFIQTHL
PELLELLVEP GQLSSSGQVL RDSHLTSEAV ESLSLLLEGS VSHSRTVHPV HKLLSRSQLQ
SQAGFSKLSC SYSLQQFQDF LRQALCLNPF GISNCSQSGK KLSWALQVEG TLKKAKIFRN
THAAPPGSRL VLMSQVCKQT LAKDSEKLND VNIKLHRCSE AFIYLLSPLW SVTLDKCRNS
TLVLGPVRTS VHIQSCENVR VVCVAGRLTI GGSFNCTIHS LTPTRPLLLP GNASLTLGPF
HTQYPTLEDH MASAGLAVVP NLWNQPLLFG VEGSAPDTGC YRIQPPSEFY PLVIPFQMDG
DNCEIPCSLP EDFQKALESR EKTIEEWQKT VKDAHLNKAQ RRQFQALVEQ KFHEWLLETG
QRQELDSLLP PTITPSSSAE HWSSNQNTLK EQTHEQPTGT VC