TBP2_ORYSJ
ID TBP2_ORYSJ Reviewed; 203 AA.
AC Q8W0W4; Q10FT1; Q7Y094;
DT 30-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT 30-AUG-2005, sequence version 2.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=TATA-binding protein 2;
DE AltName: Full=TATA sequence-binding protein 2;
DE Short=TBP-2;
DE AltName: Full=TATA-binding factor 2;
DE AltName: Full=TATA-box factor 2;
DE AltName: Full=Transcription initiation factor TFIID TBP-2 subunit;
GN Name=TBP2; Synonyms=TFIID; OrderedLocusNames=Os03g0657000, LOC_Os03g45410;
GN ORFNames=OSJNBa0075A22.20;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND INTERACTION WITH RF2A AND TFIIB.
RX PubMed=11971135; DOI=10.1105/tpc.010364;
RA Zhu Q., Ordiz M.I., Dabi T., Beachy R.N., Lamb C.;
RT "Rice TATA binding protein interacts functionally with transcription factor
RT IIB and the RF2a bZIP transcriptional activator in an enhanced plant in
RT vitro transcription system.";
RL Plant Cell 14:795-803(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP INTERACTION WITH CWZF7.
RX PubMed=28818372; DOI=10.1016/j.plantsci.2017.06.013;
RA Zhang Z., Zhang F., Cheng Z.J., Liu L.L., Lin Q.B., Wu F.Q., Zhang H.,
RA Wang J.L., Wang J., Guo X.P., Zhang X., Lei C.L., Zhao Z.C., Zhu S.S.,
RA Wan J.M.;
RT "Functional characterization of rice CW-domain containing zinc finger
RT proteins involved in histone recognition.";
RL Plant Sci. 263:168-176(2017).
CC -!- FUNCTION: General transcription factor that functions at the core of
CC the DNA-binding multiprotein factor TFIID (Probable). Binding of TFIID
CC to the TATA box is the initial transcriptional step of the pre-
CC initiation complex (PIC), playing a role in the activation of
CC eukaryotic genes transcribed by RNA polymerase II (By similarity).
CC {ECO:0000250, ECO:0000269|PubMed:11971135,
CC ECO:0000305|PubMed:11971135}.
CC -!- SUBUNIT: Belongs to the TFIID complex together with the TBP-associated
CC factors (TAFs). Binds DNA as monomer (By similarity). Interacts with
CC RF2A and TFIIB (PubMed:11971135). Interacts with CWZF7
CC (PubMed:28818372). {ECO:0000250, ECO:0000269|PubMed:11971135,
CC ECO:0000269|PubMed:28818372}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the TBP family. {ECO:0000305}.
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DR EMBL; AF464907; AAL73490.1; -; mRNA.
DR EMBL; AC133859; AAP50993.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF97976.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF12726.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS85567.1; -; Genomic_DNA.
DR EMBL; AK061103; BAG87728.1; -; mRNA.
DR RefSeq; XP_015631681.1; XM_015776195.1.
DR AlphaFoldDB; Q8W0W4; -.
DR SMR; Q8W0W4; -.
DR STRING; 4530.OS03T0657000-01; -.
DR PaxDb; Q8W0W4; -.
DR PRIDE; Q8W0W4; -.
DR EnsemblPlants; Os03t0657000-01; Os03t0657000-01; Os03g0657000.
DR GeneID; 4333619; -.
DR Gramene; Os03t0657000-01; Os03t0657000-01; Os03g0657000.
DR KEGG; osa:4333619; -.
DR eggNOG; KOG3302; Eukaryota.
DR HOGENOM; CLU_060161_4_2_1; -.
DR OMA; NCEYEPE; -.
DR OrthoDB; 1219067at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q8W0W4; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0140223; F:general transcription initiation factor activity; IBA:GO_Central.
DR GO; GO:0016251; F:RNA polymerase II general transcription initiation factor activity; IBA:GO_Central.
DR GO; GO:0006352; P:DNA-templated transcription, initiation; IBA:GO_Central.
DR CDD; cd04516; TBP_eukaryotes; 1.
DR Gene3D; 3.30.310.10; -; 2.
DR HAMAP; MF_00408; TATA_bind_prot_arch; 1.
DR InterPro; IPR000814; TBP.
DR InterPro; IPR030491; TBP_CS.
DR InterPro; IPR012295; TBP_dom_sf.
DR InterPro; IPR033710; TBP_eukaryotic.
DR PANTHER; PTHR10126; PTHR10126; 1.
DR Pfam; PF00352; TBP; 2.
DR PRINTS; PR00686; TIFACTORIID.
DR PROSITE; PS00351; TFIID; 2.
PE 1: Evidence at protein level;
KW Activator; DNA-binding; Nucleus; Reference proteome; Repeat; Transcription;
KW Transcription regulation.
FT CHAIN 1..203
FT /note="TATA-binding protein 2"
FT /id="PRO_0000153981"
FT REPEAT 28..104
FT /note="1"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00408"
FT REPEAT 118..195
FT /note="2"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_00408"
SQ SEQUENCE 203 AA; 22481 MW; 15A9C69352FAF158 CRC64;
MAAEAAAALE GSEPVDLAKH PSGIIPTLQN IVSTVNLDCK LDLKAIALQA RNAEYNPKRF
AAVIMRIREP KTTALIFASG KMVCTGAKSE QQSKLAARKY ARIIQKLGFP AKFKDFKIQN
IVGSCDVKFP IRLEGLAYSH GAFSSYEPEL FPGLIYRMKQ PKIVLLIFVS GKIVLTGAKV
RDETYTAFEN IYPVLTEFRK VQQ
