TBX20_XENTR
ID TBX20_XENTR Reviewed; 440 AA.
AC Q3SA46;
DT 28-NOV-2006, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2005, sequence version 1.
DT 03-AUG-2022, entry version 104.
DE RecName: Full=T-box transcription factor TBX20;
DE Short=T-box protein 20;
GN Name=tbx20;
OS Xenopus tropicalis (Western clawed frog) (Silurana tropicalis).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana.
OX NCBI_TaxID=8364;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], AND DEVELOPMENTAL STAGE.
RX PubMed=16477648; DOI=10.1002/dvdy.20714;
RA Showell C., Christine K.S., Mandel E.M., Conlon F.L.;
RT "Developmental expression patterns of Tb x 1, Tb x 2, Tb x 5, and Tb x 20
RT in Xenopus tropicalis.";
RL Dev. Dyn. 235:1623-1630(2006).
CC -!- FUNCTION: Transcriptional regulator that may be involved in heart
CC developmental processes. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00201}.
CC -!- DEVELOPMENTAL STAGE: At late neurula stage (stage 20), strongly
CC expressed in the developing cement gland and in the bilateral heart
CC primordia. Expression in the cement gland decreases from stage 25
CC onward, while expression continues to be strongly detected in the
CC developing heart. In the heart-forming region at stage 25, expression
CC seen in the heart field formed by fusion of the bilateral heart
CC primordia and also seen in the hindbrain (rhombencephalon) at this
CC stage, corresponding to the second and fourth rhombomeres. At stage
CC 29/30, expression persists in these regions and also weakly detected in
CC a more posterior region of the hindbrain. At stage 33, when heart
CC looping is initiated, broadly expressed in the heart tube, ventricle,
CC atrium and both branches of the sinus venosus. During heart looping
CC (stage 36), expressed at a higher level in the atrium than in the
CC ventricle. {ECO:0000269|PubMed:16477648}.
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DR EMBL; DQ124208; AAZ79653.1; -; mRNA.
DR RefSeq; NP_001030292.1; NM_001035120.1.
DR AlphaFoldDB; Q3SA46; -.
DR SMR; Q3SA46; -.
DR PaxDb; Q3SA46; -.
DR Ensembl; ENSXETT00000028708; ENSXETP00000028708; ENSXETG00000013110.
DR GeneID; 619590; -.
DR KEGG; xtr:619590; -.
DR CTD; 57057; -.
DR Xenbase; XB-GENE-487334; tbx20.
DR eggNOG; KOG3586; Eukaryota.
DR HOGENOM; CLU_014430_7_1_1; -.
DR InParanoid; Q3SA46; -.
DR OMA; HMANISC; -.
DR OrthoDB; 828211at2759; -.
DR PhylomeDB; Q3SA46; -.
DR TreeFam; TF106341; -.
DR Proteomes; UP000008143; Chromosome 6.
DR Proteomes; UP000790000; Unplaced.
DR Bgee; ENSXETG00000013110; Expressed in heart and 8 other tissues.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0001708; P:cell fate specification; IBA:GO_Central.
DR GO; GO:0001947; P:heart looping; IBA:GO_Central.
DR GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0001570; P:vasculogenesis; IBA:GO_Central.
DR CDD; cd00182; TBOX; 1.
DR Gene3D; 2.60.40.820; -; 1.
DR InterPro; IPR008967; p53-like_TF_DNA-bd.
DR InterPro; IPR046360; T-box_DNA-bd.
DR InterPro; IPR036960; T-box_sf.
DR InterPro; IPR001699; TF_T-box.
DR InterPro; IPR018186; TF_T-box_CS.
DR PANTHER; PTHR11267; PTHR11267; 2.
DR Pfam; PF00907; T-box; 1.
DR PRINTS; PR00937; TBOX.
DR SMART; SM00425; TBOX; 1.
DR SUPFAM; SSF49417; SSF49417; 1.
DR PROSITE; PS01283; TBOX_1; 1.
DR PROSITE; PS01264; TBOX_2; 1.
DR PROSITE; PS50252; TBOX_3; 1.
PE 2: Evidence at transcript level;
KW Developmental protein; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..440
FT /note="T-box transcription factor TBX20"
FT /id="PRO_0000262695"
FT DNA_BIND 103..282
FT /note="T-box"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00201"
SQ SEQUENCE 440 AA; 48912 MW; B18A63D173A74560 CRC64;
MEYTPSPKPQ LSSRANAFSI AALMSSGTPK DKETQESTIK PLEQFVEKSS CSQPLGDISI
VDSHGEFTNS PSSLCTEPLI PTTPVIPSEE MAKISCSLET KELWDKFHDL GTEMIITKSG
RRMFPTIRVS FSGVDADAKY IVLMDIVPVD NKRYRYAYHR SSWLVAGKAD PPLPARLYVH
PDSPFTGEQL LKQMVSFEKV KLTNNELDQH GHIILNSMHK YQPRVHIIKK KDHTASLLNL
KSEEFRTFIF QETVFTAVTA YQNQLITKLK IDSNPFAKGF RDSSRLTDIE RESVESLIQK
HSYARSPIRT YGDEDVLGED GQTMQSRGSA FTTSENLSLS SWVSSTSGFS GFQHPQSLTA
LGTSTASLAT PIPHPIQGTL PPYSRLGMPI TPSALASSMQ GSGPTFPSFH MPRYHHYFQQ
GPYAAIQGLR HSSAVMTPFV