TCP10_ARATH
ID TCP10_ARATH Reviewed; 361 AA.
AC O82277;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1998, sequence version 1.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Transcription factor TCP10;
GN Name=TCP10; OrderedLocusNames=At2g31070; ORFNames=T16B12.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND INTERACTION WITH AHP1; AHP2
RP AND AHP3.
RX PubMed=11158442; DOI=10.1093/pcp/pce011;
RA Suzuki T., Sakurai K., Ueguchi C., Mizuno T.;
RT "Two types of putative nuclear factors that physically interact with
RT histidine-containing phosphotransfer (Hpt) domains, signaling mediators in
RT His-to-Asp phosphorelay, in Arabidopsis thaliana.";
RL Plant Cell Physiol. 42:37-45(2001).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17307924; DOI=10.1105/tpc.106.048934;
RA Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.;
RT "Arabidopsis BRANCHED1 acts as an integrator of branching signals within
RT axillary buds.";
RL Plant Cell 19:458-472(2007).
RN [6]
RP FUNCTION, DEVELOPMENTAL STAGE, AND TISSUE SPECIFICITY.
RX PubMed=17307931; DOI=10.1105/tpc.106.044792;
RA Koyama T., Furutani M., Tasaka M., Ohme-Takagi M.;
RT "TCP transcription factors control the morphology of shoot lateral organs
RT via negative regulation of the expression of boundary-specific genes in
RT Arabidopsis.";
RL Plant Cell 19:473-484(2007).
RN [7]
RP INTERACTION WITH SPL.
RX PubMed=25527103; DOI=10.1016/j.jgg.2014.08.009;
RA Chen G.H., Sun J.Y., Liu M., Liu J., Yang W.C.;
RT "SPOROCYTELESS is a novel embryophyte-specific transcription repressor that
RT interacts with TPL and TCP proteins in Arabidopsis.";
RL J. Genet. Genomics 41:617-625(2014).
RN [8]
RP FUNCTION, INTERACTION WITH SPL, AND DEVELOPMENTAL STAGE.
RX PubMed=25378179; DOI=10.1038/cr.2014.145;
RA Wei B., Zhang J., Pang C., Yu H., Guo D., Jiang H., Ding M., Chen Z.,
RA Tao Q., Gu H., Qu L.J., Qin G.;
RT "The molecular mechanism of sporocyteless/nozzle in controlling Arabidopsis
RT ovule development.";
RL Cell Res. 25:121-134(2015).
CC -!- FUNCTION: Plays a pivotal role in the control of morphogenesis of shoot
CC organs by negatively regulating the expression of boundary-specific
CC genes such as CUC genes, probably through the induction of miRNA (e.g.
CC miR164). Participates in ovule develpment (PubMed:25378179).
CC {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
CC -!- SUBUNIT: Interacts with AHP1, AHP2 and AHP3 (PubMed:11158442).
CC Interacts with SPL (PubMed:25527103, PubMed:25378179).
CC {ECO:0000269|PubMed:11158442, ECO:0000269|PubMed:25378179,
CC ECO:0000269|PubMed:25527103}.
CC -!- INTERACTION:
CC O82277; C0SUZ3: At1g35490; NbExp=3; IntAct=EBI-3133327, EBI-15192249;
CC O82277; Q8GWP4: At2g21530; NbExp=4; IntAct=EBI-3133327, EBI-15199129;
CC O82277; Q9ZW36: At2g29580; NbExp=3; IntAct=EBI-3133327, EBI-15195245;
CC O82277; F4K1A8: At5g26749; NbExp=3; IntAct=EBI-3133327, EBI-15191587;
CC O82277; O04292: ATHB-9; NbExp=3; IntAct=EBI-3133327, EBI-1536772;
CC O82277; Q9FG01: ATO; NbExp=3; IntAct=EBI-3133327, EBI-4475455;
CC O82277; Q9C7T4: BHLH96; NbExp=4; IntAct=EBI-3133327, EBI-15192637;
CC O82277; Q8RU59: bZIP48; NbExp=3; IntAct=EBI-3133327, EBI-943044;
CC O82277; O80340: ERF4; NbExp=3; IntAct=EBI-3133327, EBI-966009;
CC O82277; Q8L8A5: GIF1; NbExp=3; IntAct=EBI-3133327, EBI-1396623;
CC O82277; Q9C9H1: GIS3; NbExp=3; IntAct=EBI-3133327, EBI-15194063;
CC O82277; Q9LXD8: HEC3; NbExp=3; IntAct=EBI-3133327, EBI-1536734;
CC O82277; F4JRB0-2: HHO5; NbExp=3; IntAct=EBI-3133327, EBI-15192423;
CC O82277; O04017: NAC098; NbExp=3; IntAct=EBI-3133327, EBI-1998502;
CC O82277; Q4PSE2: NFYC8; NbExp=3; IntAct=EBI-3133327, EBI-15191571;
CC O82277; Q9LXU1: PIM1; NbExp=3; IntAct=EBI-3133327, EBI-15193025;
CC O82277; Q8S8E3: PYL6; NbExp=3; IntAct=EBI-3133327, EBI-2363192;
CC O82277; Q84MC7: PYL9; NbExp=3; IntAct=EBI-3133327, EBI-2349513;
CC O82277; Q94JW8: SPL6; NbExp=3; IntAct=EBI-3133327, EBI-4428552;
CC O82277; O65517: SRS2; NbExp=3; IntAct=EBI-3133327, EBI-15192995;
CC O82277; Q93ZE2: TGA7; NbExp=4; IntAct=EBI-3133327, EBI-541400;
CC O82277; Q6X7J9: WOX4; NbExp=3; IntAct=EBI-3133327, EBI-4459694;
CC O82277; O22152: YAB1; NbExp=3; IntAct=EBI-3133327, EBI-1113627;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00701,
CC ECO:0000269|PubMed:11158442}.
CC -!- TISSUE SPECIFICITY: Mostly detected in lateral organs, such as leaves
CC and flowers. Expressed in cotyledons, particularly in the vascular
CC region, in leaves, roots, stems, buds, flowers and immature siliques.
CC {ECO:0000269|PubMed:11158442, ECO:0000269|PubMed:17307931}.
CC -!- DEVELOPMENTAL STAGE: First observed in the distal and middle regions of
CC cotyledons of heart-shaped embryos. Later localized in bending
CC cotyledon, and mature embryos, but no signals were detected in the
CC presumptive shoot apical meristem (SAM) and the boundary region during
CC embryogenesis. Expressed during ovule development (PubMed:25378179).
CC {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
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DR EMBL; AC005311; AAC63845.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC08487.1; -; Genomic_DNA.
DR EMBL; AY059945; AAL24427.1; -; mRNA.
DR EMBL; BT001194; AAN65081.1; -; mRNA.
DR PIR; B84716; B84716.
DR RefSeq; NP_565712.1; NM_128662.2.
DR AlphaFoldDB; O82277; -.
DR SMR; O82277; -.
DR BioGRID; 3007; 150.
DR IntAct; O82277; 133.
DR STRING; 3702.AT2G31070.1; -.
DR iPTMnet; O82277; -.
DR PaxDb; O82277; -.
DR PRIDE; O82277; -.
DR ProteomicsDB; 234249; -.
DR EnsemblPlants; AT2G31070.1; AT2G31070.1; AT2G31070.
DR GeneID; 817659; -.
DR Gramene; AT2G31070.1; AT2G31070.1; AT2G31070.
DR KEGG; ath:AT2G31070; -.
DR Araport; AT2G31070; -.
DR TAIR; locus:2055861; AT2G31070.
DR eggNOG; ENOG502QTUM; Eukaryota.
DR HOGENOM; CLU_033594_0_0_1; -.
DR InParanoid; O82277; -.
DR OMA; INFQSYP; -.
DR OrthoDB; 889972at2759; -.
DR PRO; PR:O82277; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; O82277; baseline and differential.
DR Genevisible; O82277; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0048366; P:leaf development; IGI:TAIR.
DR GO; GO:0010150; P:leaf senescence; IGI:TAIR.
DR GO; GO:2000032; P:regulation of secondary shoot formation; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 1.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51369; TCP; 1.
PE 1: Evidence at protein level;
KW Developmental protein; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..361
FT /note="Transcription factor TCP10"
FT /id="PRO_0000330784"
FT DOMAIN 29..87
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
FT REGION 220..259
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 295..317
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 361 AA; 40379 MW; BD913598B4B125DE CRC64;
MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV
QDRLGYDRPS KAVDWLIKKA KTAIDKLELG ETTTTTTRQE PVNTKPESPT LVFQRENNDQ
TQFVAANLDP EDAMKTFFPA TTTTNGGGGT NINFQNYPHQ DDNNMVSRTT TPPPNLSQDL
GLSLHPFQGN NNTVVVPETN NFTTTHFDTF GRISGWNHHD LTMTSSSSSE HQQQEQEERS
NGGFMVNHHP HHHHHQPSMM TLLNSQQQQV FLGGQQQQQQ RGTLQSSLFP HSFRSWDHHQ
TTSDHHHHQN QASSMFASSS QYGSHGMMMM QGLSFPNTTR LLHGEEATQP NSSSSPPNSH
L
