TCP16_ARATH
ID TCP16_ARATH Reviewed; 165 AA.
AC Q9M1U4;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=Transcription factor TCP16;
GN Name=TCP16; OrderedLocusNames=At3g45150; ORFNames=T14D3.90;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX DOI=10.1002/cfg.146;
RA Paz-Ares J., Valencia A., Costantino P., Vittorioso P., Davies B.,
RA Gilmartin P., Giraudat J., Parcy F., Reindl A., Sablowski R., Coupland G.,
RA Martin C., Angenent G.C., Baeumlein H., Mock H.-P., Carbonero P.,
RA Colombo L., Tonelli C., Engstroem P., Droege-Laser W., Gatz C.,
RA Kavanagh T., Kushnir S., Zabeau M., Laux T., Hordsworth M., Ruberti I.,
RA Ratcliff F., Smeekens S., Somssich I., Weisshaar B., Traas J.;
RT "REGIA, an EU project on functional genomics of transcription factors from
RT Arabidopsis thaliana.";
RL Comp. Funct. Genomics 3:102-108(2002).
RN [4]
RP FUNCTION, TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
RX PubMed=16786299; DOI=10.1007/s11103-006-6265-9;
RA Takeda T., Amano K., Ohto M.-A., Nakamura K., Sato S., Kato T., Tabata S.,
RA Ueguchi C.;
RT "RNA interference of the Arabidopsis putative transcription factor TCP16
RT gene results in abortion of early pollen development.";
RL Plant Mol. Biol. 61:165-177(2006).
RN [5]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17307924; DOI=10.1105/tpc.106.048934;
RA Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.;
RT "Arabidopsis BRANCHED1 acts as an integrator of branching signals within
RT axillary buds.";
RL Plant Cell 19:458-472(2007).
CC -!- FUNCTION: Required during early processes in pollen development.
CC {ECO:0000269|PubMed:16786299}.
CC -!- INTERACTION:
CC Q9M1U4; Q7X887: At2g02060; NbExp=3; IntAct=EBI-15198627, EBI-15196671;
CC Q9M1U4; O82617: BBX23; NbExp=3; IntAct=EBI-15198627, EBI-15191793;
CC Q9M1U4; Q8S307: BZR1; NbExp=3; IntAct=EBI-15198627, EBI-1803261;
CC Q9M1U4; O80340: ERF4; NbExp=5; IntAct=EBI-15198627, EBI-966009;
CC Q9M1U4; Q9MAI5: ERF8; NbExp=3; IntAct=EBI-15198627, EBI-2000137;
CC Q9M1U4; Q9FE67: ERF9; NbExp=3; IntAct=EBI-15198627, EBI-4431933;
CC Q9M1U4; A0A2H1ZEF6: IAA15; NbExp=3; IntAct=EBI-15198627, EBI-25524519;
CC Q9M1U4; P93830: IAA17; NbExp=6; IntAct=EBI-15198627, EBI-632243;
CC Q9M1U4; O24410: IAA20; NbExp=3; IntAct=EBI-15198627, EBI-632272;
CC Q9M1U4; Q38827: IAA9; NbExp=3; IntAct=EBI-15198627, EBI-632216;
CC Q9M1U4; Q9LUA3: NIMIN-2; NbExp=3; IntAct=EBI-15198627, EBI-541107;
CC Q9M1U4; Q9FNZ4: NIMIN-3; NbExp=3; IntAct=EBI-15198627, EBI-541115;
CC Q9M1U4; Q6X7J9: WOX4; NbExp=3; IntAct=EBI-15198627, EBI-4459694;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Mostly in anther in young buds.
CC {ECO:0000269|PubMed:16786299}.
CC -!- DEVELOPMENTAL STAGE: Expressed in developing microspores during pollen
CC development. First observed at the tetrad stage, and later accumulates
CC in an early unicellular stage. Levels decrease as the pollen grain
CC matures. {ECO:0000269|PubMed:16786299}.
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DR EMBL; AL138649; CAB72153.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77998.1; -; Genomic_DNA.
DR EMBL; DR751441; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; DR751442; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; T47455; T47455.
DR RefSeq; NP_190101.1; NM_114384.1.
DR AlphaFoldDB; Q9M1U4; -.
DR SMR; Q9M1U4; -.
DR BioGRID; 8971; 73.
DR IntAct; Q9M1U4; 66.
DR STRING; 3702.AT3G45150.1; -.
DR PaxDb; Q9M1U4; -.
DR PRIDE; Q9M1U4; -.
DR EnsemblPlants; AT3G45150.1; AT3G45150.1; AT3G45150.
DR GeneID; 823651; -.
DR Gramene; AT3G45150.1; AT3G45150.1; AT3G45150.
DR KEGG; ath:AT3G45150; -.
DR Araport; AT3G45150; -.
DR TAIR; locus:2096925; AT3G45150.
DR eggNOG; ENOG502R1MR; Eukaryota.
DR HOGENOM; CLU_1613083_0_0_1; -.
DR OMA; NIGHHEM; -.
DR OrthoDB; 1625598at2759; -.
DR PhylomeDB; Q9M1U4; -.
DR PRO; PR:Q9M1U4; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9M1U4; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 1.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51369; TCP; 1.
PE 1: Evidence at protein level;
KW Developmental protein; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..165
FT /note="Transcription factor TCP16"
FT /id="PRO_0000330790"
FT DOMAIN 17..71
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 146..165
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 165 AA; 17998 MW; 36C9282656187FDF CRC64;
MDSKNGINNS QKARRTPKDR HLKIGGRDRR IRIPPSVAPQ LFRLTKELGF KTDGETVSWL
LQNAEPAIFA ATGHGVTTTS NEDIQPNRNF PSYTFNGDNI SNNVFPCTVV NTGHRQMVFP
VSTMTDHAPS TNYSTISDNY NSTFNGNATA SDTTSAATTT ATTTV
