TCP17_ARATH
ID TCP17_ARATH Reviewed; 242 AA.
AC Q9LEZ9;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=Transcription factor TCP17;
GN Name=TCP17; OrderedLocusNames=At5g08070; ORFNames=T22D6.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Bautista V.R., Kim C.J., Chen H., Wu S.Y., De Los Reyes C., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JAN-2007) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17307924; DOI=10.1105/tpc.106.048934;
RA Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.;
RT "Arabidopsis BRANCHED1 acts as an integrator of branching signals within
RT axillary buds.";
RL Plant Cell 19:458-472(2007).
RN [5]
RP FUNCTION, AND TISSUE SPECIFICITY.
RX PubMed=17307931; DOI=10.1105/tpc.106.044792;
RA Koyama T., Furutani M., Tasaka M., Ohme-Takagi M.;
RT "TCP transcription factors control the morphology of shoot lateral organs
RT via negative regulation of the expression of boundary-specific genes in
RT Arabidopsis.";
RL Plant Cell 19:473-484(2007).
RN [6]
RP INTERACTION WITH SPL.
RX PubMed=25527103; DOI=10.1016/j.jgg.2014.08.009;
RA Chen G.H., Sun J.Y., Liu M., Liu J., Yang W.C.;
RT "SPOROCYTELESS is a novel embryophyte-specific transcription repressor that
RT interacts with TPL and TCP proteins in Arabidopsis.";
RL J. Genet. Genomics 41:617-625(2014).
RN [7]
RP FUNCTION, INTERACTION WITH SPL, AND DEVELOPMENTAL STAGE.
RX PubMed=25378179; DOI=10.1038/cr.2014.145;
RA Wei B., Zhang J., Pang C., Yu H., Guo D., Jiang H., Ding M., Chen Z.,
RA Tao Q., Gu H., Qu L.J., Qin G.;
RT "The molecular mechanism of sporocyteless/nozzle in controlling Arabidopsis
RT ovule development.";
RL Cell Res. 25:121-134(2015).
CC -!- FUNCTION: Plays a pivotal role in the control of morphogenesis of shoot
CC organs by negatively regulating the expression of boundary-specific
CC genes such as CUC genes, probably through the induction of miRNA (e.g.
CC miR164). Participates in ovule develpment (PubMed:25378179).
CC {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
CC -!- SUBUNIT: Interacts with SPL. {ECO:0000269|PubMed:25378179,
CC ECO:0000269|PubMed:25527103}.
CC -!- INTERACTION:
CC Q9LEZ9; Q39011: ASK7; NbExp=4; IntAct=EBI-15192327, EBI-1798250;
CC Q9LEZ9; Q9LQT8: GAI; NbExp=3; IntAct=EBI-15192327, EBI-963606;
CC Q9LEZ9; Q94C37: HDG2; NbExp=3; IntAct=EBI-15192327, EBI-15196469;
CC Q9LEZ9; P46639: KNAT1; NbExp=3; IntAct=EBI-15192327, EBI-530486;
CC Q9LEZ9; Q8GXW1: RGL2; NbExp=3; IntAct=EBI-15192327, EBI-963665;
CC Q9LEZ9; Q9LF53: RGL3; NbExp=3; IntAct=EBI-15192327, EBI-15681313;
CC Q9LEZ9; Q8LPR5: TCP4; NbExp=3; IntAct=EBI-15192327, EBI-15192325;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the
CC vascular region, in leaves, roots, stems, buds, flowers and siliques.
CC {ECO:0000269|PubMed:17307931}.
CC -!- DEVELOPMENTAL STAGE: Expressed during ovule development
CC (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
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DR EMBL; AL357612; CAB93708.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91241.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM69189.1; -; Genomic_DNA.
DR EMBL; BT029995; ABN04733.1; -; mRNA.
DR PIR; T50492; T50492.
DR RefSeq; NP_001318505.1; NM_001342977.1.
DR RefSeq; NP_196424.1; NM_120889.1.
DR AlphaFoldDB; Q9LEZ9; -.
DR SMR; Q9LEZ9; -.
DR BioGRID; 15979; 38.
DR IntAct; Q9LEZ9; 26.
DR STRING; 3702.AT5G08070.1; -.
DR PaxDb; Q9LEZ9; -.
DR PRIDE; Q9LEZ9; -.
DR EnsemblPlants; AT5G08070.1; AT5G08070.1; AT5G08070.
DR EnsemblPlants; AT5G08070.2; AT5G08070.2; AT5G08070.
DR GeneID; 830701; -.
DR Gramene; AT5G08070.1; AT5G08070.1; AT5G08070.
DR Gramene; AT5G08070.2; AT5G08070.2; AT5G08070.
DR KEGG; ath:AT5G08070; -.
DR Araport; AT5G08070; -.
DR TAIR; locus:2181479; AT5G08070.
DR eggNOG; ENOG502QS1Y; Eukaryota.
DR HOGENOM; CLU_064607_0_0_1; -.
DR InParanoid; Q9LEZ9; -.
DR OMA; WNNPRIV; -.
DR OrthoDB; 995789at2759; -.
DR PhylomeDB; Q9LEZ9; -.
DR PRO; PR:Q9LEZ9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LEZ9; baseline and differential.
DR Genevisible; Q9LEZ9; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0048366; P:leaf development; IGI:TAIR.
DR GO; GO:0010150; P:leaf senescence; IGI:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 2.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51369; TCP; 1.
PE 1: Evidence at protein level;
KW Developmental protein; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..242
FT /note="Transcription factor TCP17"
FT /id="PRO_0000330791"
FT DOMAIN 33..91
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
SQ SEQUENCE 242 AA; 27412 MW; 925A5F26FD3AF66E CRC64;
MGIKKEDQKS SLSLLTQRWN NPRIVRVSRA FGGKDRHSKV CTVRGLRDRR IRLSVMTAIQ
VYDLQERLGL SQPSKVIDWL LEVAKNDVDL LPPLQFPPGF HQLNPNLTGL GESFPGVFDL
GRTQREALDL EKRKWVNLDH VFDHIDHHNH FSNSIQSNKL YFPTITSSSS SYHYNLGHLQ
QSLLDQSGNV TVAFSNNYNN NNLNPPAAET MSSLFPTRYP SFLGGGQLQL FSSTSSQPDH
IE
