TCP19_ARATH
ID TCP19_ARATH Reviewed; 293 AA.
AC Q9LT89; Q8LCV9;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 103.
DE RecName: Full=Transcription factor TCP19;
GN Name=TCP19; OrderedLocusNames=At5g51910; ORFNames=MJM18.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17307924; DOI=10.1105/tpc.106.048934;
RA Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.;
RT "Arabidopsis BRANCHED1 acts as an integrator of branching signals within
RT axillary buds.";
RL Plant Cell 19:458-472(2007).
CC -!- INTERACTION:
CC Q9LT89; F4K1A8: At5g26749; NbExp=3; IntAct=EBI-4426178, EBI-15191587;
CC Q9LT89; Q9C9H1: GIS3; NbExp=4; IntAct=EBI-4426178, EBI-15194063;
CC Q9LT89; P46639: KNAT1; NbExp=3; IntAct=EBI-4426178, EBI-530486;
CC Q9LT89; Q8H1R0: PYL10; NbExp=3; IntAct=EBI-4426178, EBI-2363213;
CC Q9LT89; Q9FJ50: PYL11; NbExp=3; IntAct=EBI-4426178, EBI-2363233;
CC Q9LT89; Q9FJ49: PYL12; NbExp=3; IntAct=EBI-4426178, EBI-2363244;
CC Q9LT89; Q9SN51: PYL13; NbExp=3; IntAct=EBI-4426178, EBI-25515027;
CC Q9LT89; O80992: PYL2; NbExp=3; IntAct=EBI-4426178, EBI-2363125;
CC Q9LT89; Q9SSM7: PYL3; NbExp=3; IntAct=EBI-4426178, EBI-2363144;
CC Q9LT89; O80920: PYL4; NbExp=3; IntAct=EBI-4426178, EBI-2349683;
CC Q9LT89; Q9FLB1: PYL5; NbExp=3; IntAct=EBI-4426178, EBI-2363181;
CC Q9LT89; Q8S8E3: PYL6; NbExp=3; IntAct=EBI-4426178, EBI-2363192;
CC Q9LT89; Q1ECF1: PYL7; NbExp=3; IntAct=EBI-4426178, EBI-2363203;
CC Q9LT89; Q9FGM1: PYL8; NbExp=3; IntAct=EBI-4426178, EBI-2429535;
CC Q9LT89; Q84MC7: PYL9; NbExp=3; IntAct=EBI-4426178, EBI-2349513;
CC Q9LT89; O49686: PYR1; NbExp=3; IntAct=EBI-4426178, EBI-2349590;
CC Q9LT89; Q9FTA2: TCP21; NbExp=3; IntAct=EBI-4426178, EBI-4426168;
CC Q9LT89; Q9FMX2: TCP7; NbExp=3; IntAct=EBI-4426178, EBI-15192677;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAM64446.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR EMBL; AB025623; BAA97226.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96144.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96145.1; -; Genomic_DNA.
DR EMBL; AK118579; BAC43179.1; -; mRNA.
DR EMBL; BT008779; AAP68218.1; -; mRNA.
DR EMBL; AY086379; AAM64446.1; ALT_INIT; mRNA.
DR RefSeq; NP_200004.1; NM_124570.4.
DR RefSeq; NP_851173.1; NM_180842.1.
DR AlphaFoldDB; Q9LT89; -.
DR BioGRID; 20511; 93.
DR IntAct; Q9LT89; 79.
DR STRING; 3702.AT5G51910.1; -.
DR PaxDb; Q9LT89; -.
DR PRIDE; Q9LT89; -.
DR ProteomicsDB; 246469; -.
DR EnsemblPlants; AT5G51910.1; AT5G51910.1; AT5G51910.
DR EnsemblPlants; AT5G51910.2; AT5G51910.2; AT5G51910.
DR GeneID; 835266; -.
DR Gramene; AT5G51910.1; AT5G51910.1; AT5G51910.
DR Gramene; AT5G51910.2; AT5G51910.2; AT5G51910.
DR KEGG; ath:AT5G51910; -.
DR Araport; AT5G51910; -.
DR TAIR; locus:2166518; AT5G51910.
DR eggNOG; ENOG502RXJ1; Eukaryota.
DR HOGENOM; CLU_058546_1_0_1; -.
DR InParanoid; Q9LT89; -.
DR OMA; MLMKQED; -.
DR OrthoDB; 1456249at2759; -.
DR PhylomeDB; Q9LT89; -.
DR PRO; PR:Q9LT89; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9LT89; baseline and differential.
DR Genevisible; Q9LT89; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0031347; P:regulation of defense response; IMP:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 1.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51369; TCP; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..293
FT /note="Transcription factor TCP19"
FT /id="PRO_0000330793"
FT DOMAIN 57..111
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
FT REGION 45..67
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 52..67
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 149
FT /note="I -> M (in Ref. 5; AAM64446)"
FT /evidence="ECO:0000305"
FT CONFLICT 208
FT /note="F -> Y (in Ref. 5; AAM64446)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 293 AA; 31460 MW; 7FC30CA2ABC4DDFA CRC64;
MESNHEGNAI QVIDQVTTMT HLSDPNPKTK PGMMLMKQED GYLQPVKTKP APKRPTSKDR
HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL LERAEPAIIE ATGTGTVPAI
AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT
ASNYGVNILN VNTQGFVPFW PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS
YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
