TCP20_ARATH
ID TCP20_ARATH Reviewed; 314 AA.
AC Q9LSD5;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 119.
DE RecName: Full=Transcription factor TCP20;
GN Name=TCP20; Synonyms=PCF1; OrderedLocusNames=At3g27010; ORFNames=MOJ10.8;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RA Herve C., Riou C., Dabos P., Lescure B.;
RT "Functional studies of Arabidopsis thaliana receptor lectin-kinase, lecRK-
RT a1.";
RL Submitted (DEC-2000) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [6]
RP FUNCTION, AND INTERACTION WITH PURA1.
RX PubMed=12631321; DOI=10.1046/j.1365-313x.2003.01682.x;
RA Tremousaygue D., Garnier L., Bardet C., Dabos P., Herve C., Lescure B.;
RT "Internal telomeric repeats and 'TCP domain' protein-binding sites co-
RT operate to regulate gene expression in Arabidopsis thaliana cycling
RT cells.";
RL Plant J. 33:957-966(2003).
RN [7]
RP FUNCTION.
RX PubMed=16123132; DOI=10.1073/pnas.0504039102;
RA Li C., Potuschak T., Colon-Carmona A., Gutierrez R.A., Doerner P.;
RT "Arabidopsis TCP20 links regulation of growth and cell division control
RT pathways.";
RL Proc. Natl. Acad. Sci. U.S.A. 102:12978-12983(2005).
RN [8]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17307924; DOI=10.1105/tpc.106.048934;
RA Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.;
RT "Arabidopsis BRANCHED1 acts as an integrator of branching signals within
RT axillary buds.";
RL Plant Cell 19:458-472(2007).
RN [9]
RP INTERACTION WITH SPL.
RX PubMed=25527103; DOI=10.1016/j.jgg.2014.08.009;
RA Chen G.H., Sun J.Y., Liu M., Liu J., Yang W.C.;
RT "SPOROCYTELESS is a novel embryophyte-specific transcription repressor that
RT interacts with TPL and TCP proteins in Arabidopsis.";
RL J. Genet. Genomics 41:617-625(2014).
CC -!- FUNCTION: Transcription factor that binds to the site II motif (3'-
CC TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in
CC the promoters of cyclin CYCB1-1 and ribosomal protein genes.
CC {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
CC -!- SUBUNIT: Interacts with PURA1 (PubMed:12631321). Interacts with SPL
CC (PubMed:25527103). {ECO:0000269|PubMed:12631321,
CC ECO:0000269|PubMed:25527103}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AJ291749; CAC18326.1; -; mRNA.
DR EMBL; AB026649; BAB01082.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77254.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65877.1; -; Genomic_DNA.
DR EMBL; AK118178; BAC42801.1; -; mRNA.
DR EMBL; BT006043; AAP04029.1; -; mRNA.
DR RefSeq; NP_001327814.1; NM_001338848.1.
DR RefSeq; NP_189337.1; NM_113615.4.
DR AlphaFoldDB; Q9LSD5; -.
DR BioGRID; 7648; 27.
DR IntAct; Q9LSD5; 6.
DR STRING; 3702.AT3G27010.1; -.
DR PaxDb; Q9LSD5; -.
DR PRIDE; Q9LSD5; -.
DR ProteomicsDB; 234168; -.
DR EnsemblPlants; AT3G27010.1; AT3G27010.1; AT3G27010.
DR EnsemblPlants; AT3G27010.2; AT3G27010.2; AT3G27010.
DR GeneID; 822318; -.
DR Gramene; AT3G27010.1; AT3G27010.1; AT3G27010.
DR Gramene; AT3G27010.2; AT3G27010.2; AT3G27010.
DR KEGG; ath:AT3G27010; -.
DR Araport; AT3G27010; -.
DR TAIR; locus:2092020; AT3G27010.
DR eggNOG; ENOG502QQMV; Eukaryota.
DR HOGENOM; CLU_070441_0_0_1; -.
DR InParanoid; Q9LSD5; -.
DR OMA; GLMISHD; -.
DR OrthoDB; 1105862at2759; -.
DR PhylomeDB; Q9LSD5; -.
DR PRO; PR:Q9LSD5; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LSD5; baseline and differential.
DR Genevisible; Q9LSD5; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0000987; F:cis-regulatory region sequence-specific DNA binding; IDA:TAIR.
DR GO; GO:0003677; F:DNA binding; IPI:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IDA:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0009653; P:anatomical structure morphogenesis; TAS:TAIR.
DR GO; GO:1900056; P:negative regulation of leaf senescence; IGI:TAIR.
DR GO; GO:0008361; P:regulation of cell size; IGI:TAIR.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 1.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51369; TCP; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..314
FT /note="Transcription factor TCP20"
FT /id="PRO_0000330794"
FT DOMAIN 78..132
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
FT REGION 1..91
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 295..314
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 58..74
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 75..91
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 314 AA; 33391 MW; B23478E491533F23 CRC64;
MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE
PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA RIFQLTRELG HKSDGETIQW
LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN
WGIGGGEGVS RSSLPTGLWP NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS
ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
QESGEKDDSQ GSGR
