TCP23_ARATH
ID TCP23_ARATH Reviewed; 341 AA.
AC Q9LQF0;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 104.
DE RecName: Full=Transcription factor TCP23;
GN Name=TCP23; OrderedLocusNames=At1g35560; ORFNames=F15O4.35;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17307924; DOI=10.1105/tpc.106.048934;
RA Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.;
RT "Arabidopsis BRANCHED1 acts as an integrator of branching signals within
RT axillary buds.";
RL Plant Cell 19:458-472(2007).
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=19376835; DOI=10.1104/pp.109.138677;
RA Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA Grossmann J., Gruissem W., Baginsky S.;
RT "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT chloroplast kinase substrates and phosphorylation networks.";
RL Plant Physiol. 150:889-903(2009).
RN [6]
RP INTERACTION WITH SPL.
RX PubMed=25527103; DOI=10.1016/j.jgg.2014.08.009;
RA Chen G.H., Sun J.Y., Liu M., Liu J., Yang W.C.;
RT "SPOROCYTELESS is a novel embryophyte-specific transcription repressor that
RT interacts with TPL and TCP proteins in Arabidopsis.";
RL J. Genet. Genomics 41:617-625(2014).
CC -!- SUBUNIT: Interacts with SPL. {ECO:0000269|PubMed:25527103}.
CC -!- INTERACTION:
CC Q9LQF0; Q9LPW7: AFB3; NbExp=3; IntAct=EBI-15192297, EBI-617501;
CC Q9LQF0; Q9FLI3: AHG1; NbExp=3; IntAct=EBI-15192297, EBI-2363348;
CC Q9LQF0; Q9ZNV8: AHP2; NbExp=3; IntAct=EBI-15192297, EBI-1100687;
CC Q9LQF0; Q94JM3: ARF2; NbExp=3; IntAct=EBI-15192297, EBI-1799262;
CC Q9LQF0; Q8L9Y3: ARR14; NbExp=3; IntAct=EBI-15192297, EBI-1100737;
CC Q9LQF0; O80366: ARR9; NbExp=3; IntAct=EBI-15192297, EBI-1100950;
CC Q9LQF0; F4K1A8: At5g26749; NbExp=3; IntAct=EBI-15192297, EBI-15191587;
CC Q9LQF0; Q8GZ13: BEE1; NbExp=3; IntAct=EBI-15192297, EBI-4440101;
CC Q9LQF0; Q93VJ4: BEE2; NbExp=5; IntAct=EBI-15192297, EBI-4424312;
CC Q9LQF0; Q7XJU2: BHLH153; NbExp=3; IntAct=EBI-15192297, EBI-4427748;
CC Q9LQF0; Q9FJ55: CIPK19; NbExp=3; IntAct=EBI-15192297, EBI-16967606;
CC Q9LQF0; Q2V452: CIPK3; NbExp=3; IntAct=EBI-15192297, EBI-1748724;
CC Q9LQF0; A9LNK9: CPSF30; NbExp=3; IntAct=EBI-15192297, EBI-962511;
CC Q9LQF0; Q9SKK0: EBF1; NbExp=3; IntAct=EBI-15192297, EBI-401198;
CC Q9LQF0; Q94ID6: ERF12; NbExp=4; IntAct=EBI-15192297, EBI-4446727;
CC Q9LQF0; Q9MAI5: ERF8; NbExp=4; IntAct=EBI-15192297, EBI-2000137;
CC Q9LQF0; Q8RWQ8: FBX14; NbExp=3; IntAct=EBI-15192297, EBI-1235922;
CC Q9LQF0; Q39103: GA3OX1; NbExp=3; IntAct=EBI-15192297, EBI-4426378;
CC Q9LQF0; Q9ZT84: GA3OX2; NbExp=3; IntAct=EBI-15192297, EBI-25512974;
CC Q9LQF0; Q9LV52: HSFC1; NbExp=3; IntAct=EBI-15192297, EBI-4457746;
CC Q9LQF0; Q84JU4: IBR5; NbExp=3; IntAct=EBI-15192297, EBI-604555;
CC Q9LQF0; P46639: KNAT1; NbExp=3; IntAct=EBI-15192297, EBI-530486;
CC Q9LQF0; P48000: KNAT3; NbExp=3; IntAct=EBI-15192297, EBI-1153908;
CC Q9LQF0; Q9S7U9: MKK2; NbExp=3; IntAct=EBI-15192297, EBI-994350;
CC Q9LQF0; Q9LPQ3: MKK7; NbExp=3; IntAct=EBI-15192297, EBI-2128593;
CC Q9LQF0; Q8GYH7: MMS21; NbExp=3; IntAct=EBI-15192297, EBI-25512915;
CC Q9LQF0; Q39021: MPK1; NbExp=3; IntAct=EBI-15192297, EBI-1238932;
CC Q9LQF0; Q9LUC3: MPK19; NbExp=3; IntAct=EBI-15192297, EBI-25512843;
CC Q9LQF0; Q9SJG9: MPK20; NbExp=3; IntAct=EBI-15192297, EBI-2358896;
CC Q9LQF0; Q39023: MPK3; NbExp=3; IntAct=EBI-15192297, EBI-349526;
CC Q9LQF0; Q9FX36: MYB54; NbExp=3; IntAct=EBI-15192297, EBI-25511270;
CC Q9LQF0; Q8L4B2: NFYC9; NbExp=4; IntAct=EBI-15192297, EBI-2466050;
CC Q9LQF0; Q9LXU1: PIM1; NbExp=3; IntAct=EBI-15192297, EBI-15193025;
CC Q9LQF0; Q9M9T4: PKS2; NbExp=3; IntAct=EBI-15192297, EBI-25512733;
CC Q9LQF0; O23078: PLDBETA2; NbExp=3; IntAct=EBI-15192297, EBI-25512318;
CC Q9LQF0; Q8H133: PLP8; NbExp=3; IntAct=EBI-15192297, EBI-16967096;
CC Q9LQF0; Q9FLB1: PYL5; NbExp=3; IntAct=EBI-15192297, EBI-2363181;
CC Q9LQF0; Q93ZX1: RFC4; NbExp=3; IntAct=EBI-15192297, EBI-4470690;
CC Q9LQF0; Q9SGW3: RPN12A; NbExp=3; IntAct=EBI-15192297, EBI-594133;
CC Q9LQF0; Q8H125: SCL5; NbExp=3; IntAct=EBI-15192297, EBI-15395779;
CC Q9LQF0; Q9M8Y0: SEC; NbExp=3; IntAct=EBI-15192297, EBI-4426966;
CC Q9LQF0; Q6PV67: SNZ; NbExp=3; IntAct=EBI-15192297, EBI-4436014;
CC Q9LQF0; Q9FUA4: SPT; NbExp=3; IntAct=EBI-15192297, EBI-1536703;
CC Q9LQF0; Q9FLP5: SUMO3; NbExp=3; IntAct=EBI-15192297, EBI-25512645;
CC Q9LQF0; Q9LQF0: TCP23; NbExp=3; IntAct=EBI-15192297, EBI-15192297;
CC Q9LQF0; Q9FMX2: TCP7; NbExp=3; IntAct=EBI-15192297, EBI-15192677;
CC Q9LQF0; Q9C518: TCP8; NbExp=3; IntAct=EBI-15192297, EBI-3134124;
CC Q9LQF0; Q7XA73: TIFY4A; NbExp=3; IntAct=EBI-15192297, EBI-15199673;
CC Q9LQF0; Q570C0: TIR1; NbExp=3; IntAct=EBI-15192297, EBI-307183;
CC Q9LQF0; O04336: WRKY21; NbExp=3; IntAct=EBI-15192297, EBI-1239118;
CC Q9LQF0; Q8H0Y8: WRKY41; NbExp=3; IntAct=EBI-15192297, EBI-15202502;
CC Q9LQF0; Q8GY11: WRKY43; NbExp=3; IntAct=EBI-15192297, EBI-1235953;
CC Q9LQF0; Q9S763: WRKY45; NbExp=6; IntAct=EBI-15192297, EBI-15195723;
CC Q9LQF0; Q9FHR7: WRKY49; NbExp=3; IntAct=EBI-15192297, EBI-15196471;
CC Q9LQF0; Q9FYA2: WRKY75; NbExp=3; IntAct=EBI-15192297, EBI-4427645;
CC Q9LQF0; Q9SB92: WUS; NbExp=3; IntAct=EBI-15192297, EBI-2119269;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
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DR EMBL; AC007887; AAF79358.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE31811.1; -; Genomic_DNA.
DR EMBL; AY056429; AAL08285.1; -; mRNA.
DR EMBL; AY081714; AAL87367.1; -; mRNA.
DR PIR; H86476; H86476.
DR RefSeq; NP_174789.1; NM_103253.2.
DR AlphaFoldDB; Q9LQF0; -.
DR BioGRID; 25684; 152.
DR IntAct; Q9LQF0; 137.
DR STRING; 3702.AT1G35560.1; -.
DR iPTMnet; Q9LQF0; -.
DR PaxDb; Q9LQF0; -.
DR PRIDE; Q9LQF0; -.
DR ProteomicsDB; 234203; -.
DR EnsemblPlants; AT1G35560.1; AT1G35560.1; AT1G35560.
DR GeneID; 840452; -.
DR Gramene; AT1G35560.1; AT1G35560.1; AT1G35560.
DR KEGG; ath:AT1G35560; -.
DR Araport; AT1G35560; -.
DR TAIR; locus:2014661; AT1G35560.
DR eggNOG; ENOG502QUI5; Eukaryota.
DR HOGENOM; CLU_025170_2_1_1; -.
DR OMA; TRELQHK; -.
DR OrthoDB; 1213812at2759; -.
DR PhylomeDB; Q9LQF0; -.
DR PRO; PR:Q9LQF0; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9LQF0; baseline and differential.
DR Genevisible; Q9LQF0; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0042802; F:identical protein binding; IPI:IntAct.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:0048510; P:regulation of timing of transition from vegetative to reproductive phase; IMP:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 1.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51369; TCP; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..341
FT /note="Transcription factor TCP23"
FT /id="PRO_0000330797"
FT DOMAIN 55..109
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
FT REGION 1..59
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 183..218
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 313..341
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..49
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 319..341
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 341 AA; 35950 MW; C072C18FAC99B778 CRC64;
MESHNNNQSN NNTTGSAHLV PSMGPISGSV SLTTTAPNST TTTVTAAKTP AKRPSKDRHI
KVDGRGRRIR MPAICAARVF QLTRELQHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANIS
TLNISLRSSG STLSAPLSKS FHMGRAAQNA AVFGFQQQLY HPHHITTDSS SSSLPKTFRE
EDLFKDPNFL DQEPGSRSPK PGSEAPDQDP GSTRSRTQNM IPPMWALAPT PASTNGGSAF
WMLPVGGGGG PANVQDPSQH MWAFNPGHYP GRIGSVQLGS MLVGGQQLGL GVAENNNLGL
FSGGGGDGGR VGLGMSLEQK PQHQVSDHAT RDQNPTIDGS P
