TCP6_ARATH
ID TCP6_ARATH Reviewed; 243 AA.
AC Q9FLM6;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 94.
DE RecName: Full=Transcription factor TCP6;
GN Name=TCP6; OrderedLocusNames=At5g41030; ORFNames=MEE6.10;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
RT features of the regions of 1,456,315 bp covered by nineteen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:41-54(1998).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX DOI=10.1002/cfg.146;
RA Paz-Ares J., Valencia A., Costantino P., Vittorioso P., Davies B.,
RA Gilmartin P., Giraudat J., Parcy F., Reindl A., Sablowski R., Coupland G.,
RA Martin C., Angenent G.C., Baeumlein H., Mock H.-P., Carbonero P.,
RA Colombo L., Tonelli C., Engstroem P., Droege-Laser W., Gatz C.,
RA Kavanagh T., Kushnir S., Zabeau M., Laux T., Hordsworth M., Ruberti I.,
RA Ratcliff F., Smeekens S., Somssich I., Weisshaar B., Traas J.;
RT "REGIA, an EU project on functional genomics of transcription factors from
RT Arabidopsis thaliana.";
RL Comp. Funct. Genomics 3:102-108(2002).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17307924; DOI=10.1105/tpc.106.048934;
RA Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.;
RT "Arabidopsis BRANCHED1 acts as an integrator of branching signals within
RT axillary buds.";
RL Plant Cell 19:458-472(2007).
RN [5]
RP INTERACTION WITH SPL.
RX PubMed=25527103; DOI=10.1016/j.jgg.2014.08.009;
RA Chen G.H., Sun J.Y., Liu M., Liu J., Yang W.C.;
RT "SPOROCYTELESS is a novel embryophyte-specific transcription repressor that
RT interacts with TPL and TCP proteins in Arabidopsis.";
RL J. Genet. Genomics 41:617-625(2014).
CC -!- SUBUNIT: Interacts with SPL. {ECO:0000269|PubMed:25527103}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
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DR EMBL; AB010072; BAB09705.1; -; Genomic_DNA.
DR EMBL; CP002688; AED94627.1; -; Genomic_DNA.
DR EMBL; DR750813; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; DR750814; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_198919.1; NM_123468.2.
DR AlphaFoldDB; Q9FLM6; -.
DR SMR; Q9FLM6; -.
DR BioGRID; 19356; 11.
DR IntAct; Q9FLM6; 10.
DR STRING; 3702.AT5G41030.1; -.
DR PaxDb; Q9FLM6; -.
DR PRIDE; Q9FLM6; -.
DR EnsemblPlants; AT5G41030.1; AT5G41030.1; AT5G41030.
DR GeneID; 834105; -.
DR Gramene; AT5G41030.1; AT5G41030.1; AT5G41030.
DR KEGG; ath:AT5G41030; -.
DR Araport; AT5G41030; -.
DR TAIR; locus:2163081; AT5G41030.
DR eggNOG; ENOG502QQMV; Eukaryota.
DR HOGENOM; CLU_070441_0_0_1; -.
DR InParanoid; Q9FLM6; -.
DR OMA; CAARIYQ; -.
DR OrthoDB; 1105862at2759; -.
DR PhylomeDB; Q9FLM6; -.
DR PRO; PR:Q9FLM6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FLM6; baseline and differential.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 1.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51369; TCP; 1.
PE 1: Evidence at protein level;
KW Coiled coil; DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..243
FT /note="Transcription factor TCP6"
FT /id="PRO_0000330780"
FT DOMAIN 68..122
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
FT REGION 1..55
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 42..66
FT /evidence="ECO:0000255"
FT COMPBIAS 21..55
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 243 AA; 27618 MW; E038DCF31A45B90D CRC64;
MVMEPKKNQN LPSFLNPSRQ NQDNDKKRKQ TEVKGFDIVV GEKRKKKENE EEDQEIQILY
EKEKKKPNKD RHLKVEGRGR RVRLPPLCAA RIYQLTKELG HKSDGETLEW LLQHAEPSIL
SATVNGIKPT ESVVSQPPLT ADLMICHSVE EASRTQMEAN GLWRNETGQT IGGFDLNYGI
GFDFNGVPEI GFGDNQTPGL ELRLSQVGVL NPQVFQQMGK EQFRVLHHHS HEDQQQSAEE
NGS