TCP9_ARATH
ID TCP9_ARATH Reviewed; 356 AA.
AC O64647;
DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-AUG-1998, sequence version 1.
DT 03-AUG-2022, entry version 118.
DE RecName: Full=Transcription factor TCP9;
GN Name=TCP9; OrderedLocusNames=At2g45680; ORFNames=F17K2.21;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=17307924; DOI=10.1105/tpc.106.048934;
RA Aguilar-Martinez J.A., Poza-Carrion C., Cubas P.;
RT "Arabidopsis BRANCHED1 acts as an integrator of branching signals within
RT axillary buds.";
RL Plant Cell 19:458-472(2007).
RN [5]
RP INTERACTION WITH SPL, AND TISSUE SPECIFICITY.
RX PubMed=25527103; DOI=10.1016/j.jgg.2014.08.009;
RA Chen G.H., Sun J.Y., Liu M., Liu J., Yang W.C.;
RT "SPOROCYTELESS is a novel embryophyte-specific transcription repressor that
RT interacts with TPL and TCP proteins in Arabidopsis.";
RL J. Genet. Genomics 41:617-625(2014).
CC -!- SUBUNIT: Interacts with SPL. {ECO:0000269|PubMed:25527103}.
CC -!- INTERACTION:
CC O64647; Q56XU4: At1g19860; NbExp=3; IntAct=EBI-9838721, EBI-15197415;
CC O64647; F4K1A8: At5g26749; NbExp=3; IntAct=EBI-9838721, EBI-15191587;
CC O64647; Q7XJU2: BHLH153; NbExp=3; IntAct=EBI-9838721, EBI-4427748;
CC O64647; Q9SN74: BHLH47; NbExp=3; IntAct=EBI-9838721, EBI-4437532;
CC O64647; Q93ZL5: CDF2; NbExp=3; IntAct=EBI-9838721, EBI-1536103;
CC O64647; Q9ZVC9: FRS3; NbExp=5; IntAct=EBI-9838721, EBI-4448729;
CC O64647; Q8L8A5: GIF1; NbExp=3; IntAct=EBI-9838721, EBI-1396623;
CC O64647; Q9C9H1: GIS3; NbExp=3; IntAct=EBI-9838721, EBI-15194063;
CC O64647; Q9LXD8: HEC3; NbExp=3; IntAct=EBI-9838721, EBI-1536734;
CC O64647; O22230: HSFB3; NbExp=3; IntAct=EBI-9838721, EBI-15192145;
CC O64647; P93830: IAA17; NbExp=3; IntAct=EBI-9838721, EBI-632243;
CC O64647; Q9SZU7: KAI2; NbExp=3; IntAct=EBI-9838721, EBI-25519488;
CC O64647; Q9LVS0: KUA1; NbExp=3; IntAct=EBI-9838721, EBI-15200088;
CC O64647; Q39022: MPK2; NbExp=3; IntAct=EBI-9838721, EBI-2358362;
CC O64647; Q8VY64: NFYA4; NbExp=3; IntAct=EBI-9838721, EBI-4461713;
CC O64647; O23078: PLDBETA2; NbExp=3; IntAct=EBI-9838721, EBI-25512318;
CC O64647; Q8S8E3: PYL6; NbExp=3; IntAct=EBI-9838721, EBI-2363192;
CC O64647; Q84MC7: PYL9; NbExp=3; IntAct=EBI-9838721, EBI-2349513;
CC O64647; O65517: SRS2; NbExp=3; IntAct=EBI-9838721, EBI-15192995;
CC O64647; Q9C9L2: TCP15; NbExp=3; IntAct=EBI-9838721, EBI-4426144;
CC O64647; Q9FTA2: TCP21; NbExp=3; IntAct=EBI-9838721, EBI-4426168;
CC O64647; Q9FMX2: TCP7; NbExp=4; IntAct=EBI-9838721, EBI-15192677;
CC O64647; Q9SHZ6: UBA1A; NbExp=3; IntAct=EBI-9838721, EBI-346271;
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule
CC primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
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DR EMBL; AC003680; AAC06168.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10586.1; -; Genomic_DNA.
DR EMBL; AF370606; AAK43925.1; -; mRNA.
DR EMBL; AY056214; AAL07063.1; -; mRNA.
DR EMBL; AY113981; AAM45029.1; -; mRNA.
DR PIR; T00881; T00881.
DR RefSeq; NP_182092.1; NM_130131.2.
DR AlphaFoldDB; O64647; -.
DR BioGRID; 4512; 121.
DR IntAct; O64647; 120.
DR STRING; 3702.AT2G45680.1; -.
DR PaxDb; O64647; -.
DR PRIDE; O64647; -.
DR ProteomicsDB; 234198; -.
DR EnsemblPlants; AT2G45680.1; AT2G45680.1; AT2G45680.
DR GeneID; 819176; -.
DR Gramene; AT2G45680.1; AT2G45680.1; AT2G45680.
DR KEGG; ath:AT2G45680; -.
DR Araport; AT2G45680; -.
DR TAIR; locus:2043659; AT2G45680.
DR eggNOG; ENOG502QR5H; Eukaryota.
DR HOGENOM; CLU_058546_0_0_1; -.
DR InParanoid; O64647; -.
DR OMA; TTHMLRD; -.
DR OrthoDB; 1456249at2759; -.
DR PhylomeDB; O64647; -.
DR PRO; PR:O64647; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; O64647; differential.
DR Genevisible; O64647; AT.
DR GO; GO:0005634; C:nucleus; IDA:TAIR.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0000976; F:transcription cis-regulatory region binding; IPI:TAIR.
DR GO; GO:1900056; P:negative regulation of leaf senescence; IGI:TAIR.
DR GO; GO:0008361; P:regulation of cell size; IGI:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR GO; GO:0048364; P:root development; IMP:TAIR.
DR InterPro; IPR017887; TF_TCP_subgr.
DR InterPro; IPR005333; Transcription_factor_TCP.
DR PANTHER; PTHR31072; PTHR31072; 1.
DR Pfam; PF03634; TCP; 1.
DR PROSITE; PS51369; TCP; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..356
FT /note="Transcription factor TCP9"
FT /id="PRO_0000330783"
FT DOMAIN 75..129
FT /note="TCP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00701"
FT REGION 57..85
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 151..171
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 302..322
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 356 AA; 37631 MW; 158EF5C78E7B249C CRC64;
MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL
APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF QLTRELGHKS DGETIRWLLE
NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD
AVSASSGLAP IATTTTIQPP QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ
IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
