TDL1B_ORYSJ
ID TDL1B_ORYSJ Reviewed; 169 AA.
AC Q8S6P9; A0A0P0XSX1; C7J835;
DT 04-MAR-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2002, sequence version 1.
DT 03-AUG-2022, entry version 106.
DE RecName: Full=TPD1 protein homolog 1B {ECO:0000305};
DE AltName: Full=TPD1-like protein 1B {ECO:0000303|PubMed:18248596};
DE Short=OsTDL1B {ECO:0000303|PubMed:18248596};
DE Flags: Precursor;
GN Name=TDL1B {ECO:0000303|PubMed:18248596};
GN OrderedLocusNames=Os10g0207500 {ECO:0000312|EMBL:BAH94798.1},
GN LOC_Os10g14020 {ECO:0000312|EMBL:ABB47038.2};
GN ORFNames=OJ1004_F02.2 {ECO:0000312|EMBL:AAL82671.1},
GN OsJ_31024 {ECO:0000312|EMBL:EEE50724.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12791992; DOI=10.1126/science.1083523;
RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP TISSUE SPECIFICITY.
RX PubMed=18248596; DOI=10.1111/j.1365-313x.2008.03426.x;
RA Zhao X., de Palma J., Oane R., Gamuyao R., Luo M., Chaudhury A., Herve P.,
RA Xue Q., Bennett J.;
RT "OsTDL1A binds to the LRR domain of rice receptor kinase MSP1, and is
RT required to limit sporocyte numbers.";
RL Plant J. 54:375-387(2008).
CC -!- FUNCTION: May play a role during anther development.
CC {ECO:0000250|UniProtKB:Q2QR54}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences. {ECO:0000305};
CC Name=1;
CC IsoId=Q8S6P9-1; Sequence=Displayed;
CC -!- TISSUE SPECIFICITY: Expressed in roots, and at low levels in anthers
CC during meiosis. {ECO:0000269|PubMed:18248596}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAH94798.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC092387; AAL82671.1; -; Genomic_DNA.
DR EMBL; DP000086; ABB47038.2; -; Genomic_DNA.
DR EMBL; AP008216; BAH94798.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014966; BAT10263.1; -; Genomic_DNA.
DR EMBL; CM000147; EEE50724.1; -; Genomic_DNA.
DR EMBL; AK121594; BAH00567.1; -; mRNA.
DR RefSeq; XP_015612959.1; XM_015757473.1. [Q8S6P9-1]
DR AlphaFoldDB; Q8S6P9; -.
DR STRING; 4530.OS10T0207500-01; -.
DR PaxDb; Q8S6P9; -.
DR PRIDE; Q8S6P9; -.
DR EnsemblPlants; Os10t0207500-01; Os10t0207500-01; Os10g0207500. [Q8S6P9-1]
DR GeneID; 9270335; -.
DR Gramene; Os10t0207500-01; Os10t0207500-01; Os10g0207500. [Q8S6P9-1]
DR KEGG; osa:9270335; -.
DR eggNOG; ENOG502S0K4; Eukaryota.
DR HOGENOM; CLU_102808_0_1_1; -.
DR InParanoid; Q8S6P9; -.
DR OMA; EIMNICV; -.
DR OrthoDB; 1541320at2759; -.
DR Proteomes; UP000000763; Chromosome 10.
DR Proteomes; UP000007752; Chromosome 10.
DR Proteomes; UP000059680; Chromosome 10.
DR Genevisible; Q8S6P9; OS.
DR GO; GO:0001709; P:cell fate determination; IBA:GO_Central.
DR InterPro; IPR040361; TPD1.
DR PANTHER; PTHR33184; PTHR33184; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Reference proteome; Signal.
FT SIGNAL 1..25
FT /evidence="ECO:0000255"
FT CHAIN 26..169
FT /note="TPD1 protein homolog 1B"
FT /evidence="ECO:0000255"
FT /id="PRO_0000432096"
SQ SEQUENCE 169 AA; 18185 MW; 1C92241707459DA1 CRC64;
MADCTTMRLA SSVTIILLLL VASQALVVSG ESSSSAMQSK TLNMNKLLNI SEDHSPNGGR
HWMQRMQPDS CSEQNVVVYQ NNAEHLPSGI PTYSVEIINV CTACTVYDVH ISCGEFASAE
LVDPSQFQRI GFNDCLVKGG GRLGPSEAVS FQYSNSFAYP LAVANVACE
