TDRD5_XENLA
ID TDRD5_XENLA Reviewed; 963 AA.
AC A1L1H3;
DT 03-MAY-2011, integrated into UniProtKB/Swiss-Prot.
DT 06-FEB-2007, sequence version 1.
DT 03-AUG-2022, entry version 54.
DE RecName: Full=Tudor domain-containing protein 5;
GN Name=tdrd5;
OS Xenopus laevis (African clawed frog).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia;
OC Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus.
OX NCBI_TaxID=8355;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC TISSUE=Embryo;
RG NIH - Xenopus Gene Collection (XGC) project;
RL Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Required during spermiogenesis to participate in the
CC repression transposable elements and prevent their mobilization, which
CC is essential for the germline integrity. Probably acts via the piRNA
CC metabolic process, which mediates the repression of transposable
CC elements during meiosis by forming complexes composed of piRNAs and
CC Piwi proteins and govern the methylation and subsequent repression of
CC transposons (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Note=Localizes to
CC chromatoid body (CB) and pi-body (also called intermitochondrial
CC cementin), 2 cytoplasmic ribonucleoprotein granules involved in RNA
CC processing for spermatogenesis. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the TDRD5 family. {ECO:0000305}.
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DR EMBL; BC129060; AAI29061.1; -; mRNA.
DR RefSeq; NP_001090599.1; NM_001097130.1.
DR AlphaFoldDB; A1L1H3; -.
DR SMR; A1L1H3; -.
DR PRIDE; A1L1H3; -.
DR DNASU; 100036842; -.
DR GeneID; 100036842; -.
DR KEGG; xla:100036842; -.
DR CTD; 100036842; -.
DR Xenbase; XB-GENE-5884063; tdrd5.L.
DR OrthoDB; 1115068at2759; -.
DR Proteomes; UP000186698; Chromosome 4L.
DR Bgee; 100036842; Expressed in testis and 8 other tissues.
DR GO; GO:0033391; C:chromatoid body; ISS:UniProtKB.
DR GO; GO:0071546; C:pi-body; ISS:UniProtKB.
DR GO; GO:0043046; P:DNA methylation involved in gamete generation; ISS:UniProtKB.
DR GO; GO:0030719; P:P granule organization; ISS:UniProtKB.
DR GO; GO:0007286; P:spermatid development; ISS:UniProtKB.
DR CDD; cd09975; LOTUS_2_TDRD5; 1.
DR CDD; cd04508; TUDOR; 1.
DR Gene3D; 2.40.50.90; -; 1.
DR Gene3D; 3.30.420.610; -; 3.
DR InterPro; IPR041966; LOTUS-like.
DR InterPro; IPR025605; OST-HTH/LOTUS_dom.
DR InterPro; IPR035437; SNase_OB-fold_sf.
DR InterPro; IPR037982; TDRD5_LOTUS_2.
DR InterPro; IPR002999; Tudor.
DR Pfam; PF12872; OST-HTH; 3.
DR Pfam; PF00567; TUDOR; 1.
DR PROSITE; PS51644; HTH_OST; 3.
DR PROSITE; PS50304; TUDOR; 1.
PE 2: Evidence at transcript level;
KW Cytoplasm; Developmental protein; Differentiation; Reference proteome;
KW Repeat; Spermatogenesis.
FT CHAIN 1..963
FT /note="Tudor domain-containing protein 5"
FT /id="PRO_0000408349"
FT DOMAIN 6..79
FT /note="HTH OST-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00975"
FT DOMAIN 122..197
FT /note="HTH OST-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00975"
FT DOMAIN 375..449
FT /note="HTH OST-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00975"
FT DOMAIN 586..645
FT /note="Tudor"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00211"
FT REGION 232..306
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 739..763
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 803..822
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 864..891
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 252..306
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 803..819
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 963 AA; 108146 MW; 4ECEC0157026F17A CRC64;
MEQERIMQRV QKDVRSLLIA SKNGLSIQEL EQDYRMMIGS QIPLRSLGYK STMELLLDMP
NVVQIHTQMD GTVNLSAVVD EATRKIADLV SCQKDRSTAR SRNRRRNIRP RCPVDLVRRG
RVSPVLPATV KSDLRDLLSL SPLLLSELEK AFFSRFGRSF QYTRYGFYSM LEVLRSISDI
VEVKQTRTGS LLVLRKSETG HISASLCVKK SLDCQPAAVP NKTSCVFEKC LNEPQRPEKK
PSEPATSLKI SPPEFQKFSS QEPQSITSSR SFLHSSSNKE PDVNRNVSLG ESKKSIENKT
SPAVPSNNVV LNNSLVKNSE TFESLFTRMS KPVSHVEADH ANASEPNSSD LNWLEKKLEK
ELKLCLARKG AGGSVSDDLR SDIKHVVNQH SNGLNISLLP TAFKSFTGKD LPFKELGFMS
VMELVGSLGD ILCLESTDEG KDWKLFGAKK EDLVDEFSAG LRSTNSSLSS WNSTRQSTAP
LKPVGTIFSK VDEKLWWGPL ELKVCSTEQI DIPPDAVRNQ KLHCLPRIKH SLMIGVYVES
IESPSQFYVR CCGKDTSEKL EDMMIEMRHC YSNECVSERY IVPDNCISVG QIYALRVPGD
VWWYRVIVHS IKNSELLDVF YPDFGNVATV KKSWLRFLKN CYMKVPAQAV PSSLPFVTST
EAQWSTQAIK RFRQLCSCLP LVGLVLQYVQ DVLVIFLCDT SSAEDVYLHQ LLIAQGLAKM
EPEHACKKVS RNTFMHYLTP SQEKPQEESS KSSVPSESSQ SEVLCTKETI LQVIDEVDPE
MPYLEAFPTD TDVWDENWVF SDGAGGSNTT PTIPKVETQK QENKISKEQK QPFKFCMDSG
DASVVHRPLE EFYISLIKSS KSQESTDIQQ SSHTEEQHLA EKSHRCTAEQ LQGGSSSSML
CEKKLYYENK DLTYCQQQSK CSFSPLIGFQ KLQIPRSATP AALGPAARLA TAGRLLYWAS
DSH