TET12_ARATH
ID TET12_ARATH Reviewed; 264 AA.
AC Q9FN51;
DT 06-FEB-2013, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 98.
DE RecName: Full=Tetraspanin-12;
GN Name=TET12; OrderedLocusNames=At5g23030; ORFNames=MYJ24.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9405937; DOI=10.1093/dnares/4.4.291;
RA Kotani H., Nakamura Y., Sato S., Kaneko T., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence
RT features of the regions of 1,044,062 bp covered by thirteen physically
RT assigned P1 clones.";
RL DNA Res. 4:291-300(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Kim C.J., Chen H., Cheuk R.F., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: May be involved in the regulation of cell differentiation.
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000250}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the tetraspanin (TM4SF) family. {ECO:0000305}.
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DR EMBL; AB006708; BAB09820.1; -; Genomic_DNA.
DR EMBL; CP002688; AED93110.1; -; Genomic_DNA.
DR EMBL; BT010941; AAR24719.1; -; mRNA.
DR EMBL; BT011655; AAS47661.1; -; mRNA.
DR RefSeq; NP_197694.1; NM_122209.4.
DR AlphaFoldDB; Q9FN51; -.
DR BioGRID; 17642; 1.
DR IntAct; Q9FN51; 1.
DR STRING; 3702.AT5G23030.1; -.
DR PaxDb; Q9FN51; -.
DR PRIDE; Q9FN51; -.
DR ProteomicsDB; 232814; -.
DR EnsemblPlants; AT5G23030.1; AT5G23030.1; AT5G23030.
DR GeneID; 832367; -.
DR Gramene; AT5G23030.1; AT5G23030.1; AT5G23030.
DR KEGG; ath:AT5G23030; -.
DR Araport; AT5G23030; -.
DR TAIR; locus:2178327; AT5G23030.
DR eggNOG; ENOG502QTNI; Eukaryota.
DR HOGENOM; CLU_066970_0_0_1; -.
DR InParanoid; Q9FN51; -.
DR OMA; FLYSCGC; -.
DR OrthoDB; 1209030at2759; -.
DR PhylomeDB; Q9FN51; -.
DR PRO; PR:Q9FN51; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FN51; baseline and differential.
DR Genevisible; Q9FN51; AT.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0009506; C:plasmodesma; IBA:GO_Central.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:InterPro.
DR InterPro; IPR044991; TET_plant.
DR InterPro; IPR018499; Tetraspanin/Peripherin.
DR PANTHER; PTHR32191; PTHR32191; 1.
DR Pfam; PF00335; Tetraspanin; 1.
PE 2: Evidence at transcript level;
KW Glycoprotein; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..264
FT /note="Tetraspanin-12"
FT /id="PRO_0000421052"
FT TOPO_DOM 1..13
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 14..34
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 35..45
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 46..66
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 67..75
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 76..96
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 97..228
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT TRANSMEM 229..249
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 250..264
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT CARBOHYD 180
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 264 AA; 29499 MW; 4F84C97437A6B6DB CRC64;
MLRLSNAAVI TTNAILALIG LAALSFSVYV YVQGPSQCQR FVQNPLIVTA ALLFFISSLG
LIAALYGSHI IITLYLFFLF LSILLLLVLS VFIFLVTNPT AGKALSGRGI GNVKTGDYQN
WIGNHFLRGK NWEGITKCLS DSRVCKRFGP RDIDFDSKHL SNVQFGCCRP PVECGFESKN
ATWWTVPATA TTAIIGDCKA WSNTQRQLCY ACESCKIGVL KGIRKRWRIL IVVNLLLILL
VVFLYSCGCC VRKNNRVPWK RRFF