TGA22_ORYSJ
ID TGA22_ORYSJ Reviewed; 333 AA.
AC Q6IVC3; Q8W5S0;
DT 07-SEP-2016, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 139.
DE RecName: Full=Transcription factor TGA2.2 {ECO:0000305};
DE AltName: Full=OsNIF1 {ECO:0000312|EMBL:BAB72061.1};
DE AltName: Full=OsbZIP1 {ECO:0000303|Ref.1};
DE AltName: Full=bZIP transcription factor 28 {ECO:0000303|PubMed:18065552};
DE Short=OsbZIP28 {ECO:0000303|PubMed:18065552};
GN Name=TGA2.2 {ECO:0000303|PubMed:24919709};
GN OrderedLocusNames=Os03g0318600 {ECO:0000312|EMBL:BAF11859.1},
GN LOC_Os03g20310 {ECO:0000312|EMBL:ABF95638.1};
GN ORFNames=OsJ_10635 {ECO:0000312|EMBL:EEE58954.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX DOI=10.1007/BF02772762;
RA Meng X.-B., Zhao W.-S., Lin R.-M., Wang M., Peng Y.-L.;
RT "Identification of a novel rice bZIP-type transcription factor gene,
RT OsbZIP1 involved in response to infection of Magnaporthe grisea.";
RL Plant Mol. Biol. Rep. 23:301A-301M(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Yokoyama T., Motoyama T., Yoneyama K., Yamaguchi I.;
RT "cDNA cloning of bZIP transcription factors from rice.";
RL Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Dongjin;
RA Moon S.-J., Shin D., Kim B.-G., Park S.R., Byun M.-O.;
RT "Oryza sativa japonica group cultivar Dongjin putative TGA2-like protein 1
RT mRNA.";
RL Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [7]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [8]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [9]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [10]
RP INTERACTION WITH NPR1/NH1.
RX PubMed=15986920; DOI=10.1094/mpmi-18-0511;
RA Chern M., Fitzgerald H.A., Canlas P.E., Navarre D.A., Ronald P.C.;
RT "Overexpression of a rice NPR1 homolog leads to constitutive activation of
RT defense response and hypersensitivity to light.";
RL Mol. Plant Microbe Interact. 18:511-520(2005).
RN [11]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18065552; DOI=10.1104/pp.107.112821;
RA Nijhawan A., Jain M., Tyagi A.K., Khurana J.P.;
RT "Genomic survey and gene expression analysis of the basic leucine zipper
RT transcription factor family in rice.";
RL Plant Physiol. 146:333-350(2008).
RN [12]
RP INTERACTION WITH NPR1/NH1 AND NPR3/NH3.
RX PubMed=24919709; DOI=10.1186/1471-2164-15-461;
RA Chern M., Bai W., Ruan D., Oh T., Chen X., Ronald P.C.;
RT "Interaction specificity and coexpression of rice NPR1 homologs 1 and 3
RT (NH1 and NH3), TGA transcription factors and negative regulator of
RT resistance (NRR) proteins.";
RL BMC Genomics 15:461-461(2014).
CC -!- FUNCTION: Transcriptional regulator involved in defense response.
CC {ECO:0000250|UniProtKB:Q7X993}.
CC -!- SUBUNIT: Interacts with NPR1/NH1 (PubMed:15986920, PubMed:24919709).
CC Interacts with NPR3/NH3 (PubMed:24919709).
CC {ECO:0000269|PubMed:15986920, ECO:0000269|PubMed:24919709}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00978}.
CC -!- SIMILARITY: Belongs to the bZIP family. {ECO:0000305}.
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DR EMBL; AY620414; AAT28674.1; -; mRNA.
DR EMBL; AB051294; BAB72061.1; -; mRNA.
DR EMBL; HM991173; AEF30416.1; -; mRNA.
DR EMBL; DP000009; ABF95638.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF95639.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF95640.1; -; Genomic_DNA.
DR EMBL; DP000009; ABF95641.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF11859.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS83919.1; -; Genomic_DNA.
DR EMBL; CM000140; EEE58954.1; -; Genomic_DNA.
DR EMBL; AK242257; BAH01240.1; -; mRNA.
DR RefSeq; XP_015632465.1; XM_015776979.1.
DR RefSeq; XP_015632466.1; XM_015776980.1.
DR RefSeq; XP_015632467.1; XM_015776981.1.
DR AlphaFoldDB; Q6IVC3; -.
DR STRING; 4530.OS03T0318600-01; -.
DR PaxDb; Q6IVC3; -.
DR PRIDE; Q6IVC3; -.
DR EnsemblPlants; Os03t0318600-01; Os03t0318600-01; Os03g0318600.
DR GeneID; 4332660; -.
DR Gramene; Os03t0318600-01; Os03t0318600-01; Os03g0318600.
DR KEGG; osa:4332660; -.
DR eggNOG; ENOG502QU32; Eukaryota.
DR HOGENOM; CLU_024782_1_0_1; -.
DR InParanoid; Q6IVC3; -.
DR OMA; ERYNISH; -.
DR OrthoDB; 1018848at2759; -.
DR PlantReactome; R-OSA-6788019; Salicylic acid signaling.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR InterPro; IPR004827; bZIP.
DR InterPro; IPR046347; bZIP_sf.
DR InterPro; IPR025422; TGA_domain.
DR Pfam; PF00170; bZIP_1; 1.
DR Pfam; PF14144; DOG1; 1.
DR SMART; SM00338; BRLZ; 1.
DR SUPFAM; SSF57959; SSF57959; 1.
DR PROSITE; PS50217; BZIP; 1.
DR PROSITE; PS00036; BZIP_BASIC; 1.
DR PROSITE; PS51806; DOG1; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Plant defense; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..333
FT /note="Transcription factor TGA2.2"
FT /id="PRO_0000437013"
FT DOMAIN 47..91
FT /note="bZIP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT DOMAIN 114..330
FT /note="DOG1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01147"
FT REGION 1..48
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 49..69
FT /note="Basic motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 75..89
FT /note="Leucine-zipper"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT COMPBIAS 1..36
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 247
FT /note="D -> G (in Ref. 2; BAB72061)"
FT /evidence="ECO:0000305"
FT CONFLICT 288
FT /note="N -> S (in Ref. 2; BAB72061)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 333 AA; 37070 MW; 5286318D318BC954 CRC64;
MADASSRTDT STVLDTDDKN QMVDGQSGAI VPSNSSDRSD RSDKPMDQKV LRRLAQNREA
ARKSRLRKKA YVQQLESSKL KLASLEQEIN KARQQGIYIS SSGDQTHAMS GNGAMTFDLE
YARWLEEQNK QINELRTAVN AHASDSDLRL IVDGIMAHYD EIFRLKGVAA KADVFHILSG
MWKTPAERCF LWLGGFRSSE LLKLLVNQLE PLTEQQLLGL SNLQQSSQQA EDALSQGMEA
LQQSLADTLA GSLGPSGSSG NVANYMGQMA MAMGKLGTLE NFLRQADNLR QQTLHQMQRI
LTIRQAARAL LAIHDYFSRL RALSSLWLAR PRE
