TGA23_ORYSJ
ID TGA23_ORYSJ Reviewed; 329 AA.
AC Q0JNL3; Q8W5R8;
DT 07-SEP-2016, integrated into UniProtKB/Swiss-Prot.
DT 03-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=Transcription factor TGA2.3 {ECO:0000305};
DE AltName: Full=OsNIF3 {ECO:0000312|EMBL:BAB72063.1};
DE AltName: Full=bZIP transcription factor 3 {ECO:0000303|PubMed:18065552};
DE Short=OsbZIP03 {ECO:0000303|PubMed:18065552};
GN Name=TGA2.3 {ECO:0000303|PubMed:24919709};
GN OrderedLocusNames=Os01g0279900 {ECO:0000312|EMBL:BAF04665.1},
GN LOC_Os01g17260 {ECO:0000305};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Yokoyama T., Motoyama T., Yoneyama K., Yamaguchi I.;
RT "cDNA cloning of bZIP transcription factors from rice.";
RL Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Dongjin;
RA Moon S.-J., Shin D., Kim B.-G., Park S.R., Byun M.-O.;
RT "Oryza sativa japonica group cultivar Dongjin putative TGA2-like protein 3
RT mRNA.";
RL Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [8]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18065552; DOI=10.1104/pp.107.112821;
RA Nijhawan A., Jain M., Tyagi A.K., Khurana J.P.;
RT "Genomic survey and gene expression analysis of the basic leucine zipper
RT transcription factor family in rice.";
RL Plant Physiol. 146:333-350(2008).
RN [9]
RP INTERACTION WITH NPR1/NH1 AND NPR3/NH3.
RX PubMed=24919709; DOI=10.1186/1471-2164-15-461;
RA Chern M., Bai W., Ruan D., Oh T., Chen X., Ronald P.C.;
RT "Interaction specificity and coexpression of rice NPR1 homologs 1 and 3
RT (NH1 and NH3), TGA transcription factors and negative regulator of
RT resistance (NRR) proteins.";
RL BMC Genomics 15:461-461(2014).
CC -!- FUNCTION: Transcriptional regulator involved in defense response.
CC {ECO:0000250|UniProtKB:Q7X993}.
CC -!- SUBUNIT: Interacts with NPR1/NH1 and NPR3/NH3.
CC {ECO:0000269|PubMed:24919709}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00978}.
CC -!- SIMILARITY: Belongs to the bZIP family. {ECO:0000305}.
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DR EMBL; AB051296; BAB72063.1; -; mRNA.
DR EMBL; HM991168; AEF30411.1; -; mRNA.
DR EMBL; AP000815; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AP008207; BAF04665.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS71588.1; -; Genomic_DNA.
DR EMBL; AK242743; BAH01331.1; -; mRNA.
DR RefSeq; XP_015621703.1; XM_015766217.1.
DR RefSeq; XP_015621704.1; XM_015766218.1.
DR AlphaFoldDB; Q0JNL3; -.
DR SMR; Q0JNL3; -.
DR STRING; 4530.OS01T0279900-01; -.
DR PaxDb; Q0JNL3; -.
DR PRIDE; Q0JNL3; -.
DR EnsemblPlants; Os01t0279900-01; Os01t0279900-01; Os01g0279900.
DR GeneID; 4326907; -.
DR Gramene; Os01t0279900-01; Os01t0279900-01; Os01g0279900.
DR KEGG; osa:4326907; -.
DR eggNOG; ENOG502QU32; Eukaryota.
DR HOGENOM; CLU_024782_1_1_1; -.
DR InParanoid; Q0JNL3; -.
DR OMA; RSNHENW; -.
DR OrthoDB; 1018848at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR InterPro; IPR004827; bZIP.
DR InterPro; IPR046347; bZIP_sf.
DR InterPro; IPR025422; TGA_domain.
DR Pfam; PF00170; bZIP_1; 1.
DR Pfam; PF14144; DOG1; 1.
DR SMART; SM00338; BRLZ; 1.
DR SUPFAM; SSF57959; SSF57959; 1.
DR PROSITE; PS50217; BZIP; 1.
DR PROSITE; PS00036; BZIP_BASIC; 1.
DR PROSITE; PS51806; DOG1; 1.
PE 1: Evidence at protein level;
KW DNA-binding; Nucleus; Plant defense; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..329
FT /note="Transcription factor TGA2.3"
FT /id="PRO_0000437014"
FT DOMAIN 43..87
FT /note="bZIP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT DOMAIN 110..326
FT /note="DOG1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01147"
FT REGION 1..48
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 45..65
FT /note="Basic motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 71..85
FT /note="Leucine-zipper"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT COMPBIAS 33..48
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 329 AA; 36837 MW; 7B1BCF7AF978BE4E CRC64;
MADMSPRTDT STDDTDDNHM LEPGQLALAA ASDSDRSKDK HEDQKTLRRL AQNREAARKS
RLRKKAYVQQ LENSRLKLTQ LEQELQRARQ QGIFISSSVD QTHSMSGNGA LAFDMEYARW
LEEHNRQINE LRSAVNAHAG DNELRGVVDK IMSHYEEIFK QKGNAAKADV FHVLSGMWKT
PAERCFLWLG GFRPSELLKL LSTQLEPLTE QQLSGIANLQ QSSQQAEDAL SQGMEALQQS
LAETLAGSLG SSGSTGNVAN YMGQMAMAMG KLGTLENFLR QADNLRQQTL QQMQRILTTR
QSARALLVIS DYSSRLRALS SLWLARPKE
