TGAL1_ORYSJ
ID TGAL1_ORYSJ Reviewed; 472 AA.
AC Q6IVC2; B7EFZ3; G0X430; Q8W5R7;
DT 07-SEP-2016, integrated into UniProtKB/Swiss-Prot.
DT 07-SEP-2016, sequence version 2.
DT 03-AUG-2022, entry version 87.
DE RecName: Full=Transcription factor TGAL1 {ECO:0000305};
DE AltName: Full=OsNIF4 {ECO:0000312|EMBL:BAB72064.1};
DE AltName: Full=bZIP transcription factor 8 {ECO:0000303|PubMed:18065552};
DE Short=OsbZIP08 {ECO:0000303|PubMed:18065552};
GN Name=TGAL1 {ECO:0000303|PubMed:24919709};
GN Synonyms=TGAL2 {ECO:0000303|PubMed:24919709};
GN OrderedLocusNames=Os01g0808100 {ECO:0000312|EMBL:BAS74852.1},
GN LOC_Os01g59350 {ECO:0000305};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RA Meng X.-B., Lin R.-M., Wang M., Zhao W.-S., Peng Y.-L.;
RT "Molecular cloning and expression of a cDNA encoding a bZIP protein.";
RL Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 109-472 (ISOFORM 1).
RA Yokoyama T., Motoyama T., Yoneyama K., Yamaguchi I.;
RT "cDNA cloning of bZIP transcription factors from rice.";
RL Submitted (NOV-2001) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 141-472 (ISOFORM 1).
RC STRAIN=cv. Dongjin;
RA Moon S.-J., Shin D., Kim B.-G., Park S.R., Byun M.-O.;
RT "Oryza sativa japonica group cultivar Dongjin putative TGA2-like protein 2
RT mRNA.";
RL Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18065552; DOI=10.1104/pp.107.112821;
RA Nijhawan A., Jain M., Tyagi A.K., Khurana J.P.;
RT "Genomic survey and gene expression analysis of the basic leucine zipper
RT transcription factor family in rice.";
RL Plant Physiol. 146:333-350(2008).
RN [8]
RP INTERACTION WITH NPR1/NH1; NPR2/NH2 AND NPR3/NH3.
RX PubMed=24919709; DOI=10.1186/1471-2164-15-461;
RA Chern M., Bai W., Ruan D., Oh T., Chen X., Ronald P.C.;
RT "Interaction specificity and coexpression of rice NPR1 homologs 1 and 3
RT (NH1 and NH3), TGA transcription factors and negative regulator of
RT resistance (NRR) proteins.";
RL BMC Genomics 15:461-461(2014).
CC -!- FUNCTION: Transcriptional regulator involved in defense response.
CC {ECO:0000250|UniProtKB:Q7X993}.
CC -!- SUBUNIT: Isoforms 1 and 2 interact with NPR2/NH2. Isoform 2 interacts
CC with NPR1/NH1 and NPR3/NH3. {ECO:0000269|PubMed:24919709}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00978}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q6IVC2-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q6IVC2-2; Sequence=VSP_058479, VSP_058480;
CC -!- SIMILARITY: Belongs to the bZIP family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAB72064.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AY620415; AAT28675.1; -; mRNA.
DR EMBL; AP014957; BAS74852.1; -; Genomic_DNA.
DR EMBL; AK069158; BAG91290.1; -; mRNA.
DR EMBL; AB051297; BAB72064.1; ALT_INIT; mRNA.
DR EMBL; HM991167; AEF30410.1; -; mRNA.
DR RefSeq; XP_015651146.1; XM_015795660.1. [Q6IVC2-1]
DR AlphaFoldDB; Q6IVC2; -.
DR STRING; 4530.OS01T0808100-01; -.
DR PRIDE; Q6IVC2; -.
DR EnsemblPlants; Os01t0808100-01; Os01t0808100-01; Os01g0808100. [Q6IVC2-2]
DR GeneID; 9266109; -.
DR Gramene; Os01t0808100-01; Os01t0808100-01; Os01g0808100. [Q6IVC2-2]
DR KEGG; osa:9266109; -.
DR eggNOG; ENOG502QU32; Eukaryota.
DR OMA; RIYYYYI; -.
DR OrthoDB; 1018848at2759; -.
DR Proteomes; UP000059680; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR InterPro; IPR004827; bZIP.
DR InterPro; IPR046347; bZIP_sf.
DR InterPro; IPR025422; TGA_domain.
DR Pfam; PF00170; bZIP_1; 1.
DR Pfam; PF14144; DOG1; 1.
DR SMART; SM00338; BRLZ; 1.
DR SUPFAM; SSF57959; SSF57959; 1.
DR PROSITE; PS50217; BZIP; 1.
DR PROSITE; PS00036; BZIP_BASIC; 1.
DR PROSITE; PS51806; DOG1; 1.
PE 1: Evidence at protein level;
KW Alternative splicing; DNA-binding; Nucleus; Plant defense;
KW Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..472
FT /note="Transcription factor TGAL1"
FT /id="PRO_0000437016"
FT DOMAIN 185..229
FT /note="bZIP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT DOMAIN 252..469
FT /note="DOG1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01147"
FT REGION 136..190
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 187..207
FT /note="Basic motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 213..227
FT /note="Leucine-zipper"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT COMPBIAS 161..175
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 176..190
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 342..364
FT /note="LLAGQLEPLTEQQLAGIANLQQS -> VRIYYYYIAPTYFEASPGGKMLT
FT (in isoform 2)"
FT /id="VSP_058479"
FT VAR_SEQ 365..472
FT /note="Missing (in isoform 2)"
FT /id="VSP_058480"
FT CONFLICT 1
FT /note="M -> MM (in Ref. 1; AAT28675)"
FT /evidence="ECO:0000305"
FT CONFLICT 251
FT /note="G -> R (in Ref. 6; AEF30410)"
FT /evidence="ECO:0000305"
FT CONFLICT 287
FT /note="K -> E (in Ref. 6; AEF30410)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 472 AA; 51327 MW; 336F0F475087F27D CRC64;
MEGGRLGGAA ASASAAAAAD ARGGMSGFAA PQHAIHTNLN NVQPTQVTDF GALAQSAGFR
IEDLANLSTN GLFNLKSNAH TIINDPLQFE NYVKSISPSN ITTTATVTVV DPQTLVPQKG
AQLNLVTIRT GNVENWGEST IADTSPRTDT STDPDTDERN QMFEQGQLAA PTASDSSDRS
KDKLDHKTLR RLAQNREAAR KSRLRKKAYI QNLESSRLKL TQIEQELQRA RQQGIFISTS
SDQSHSASGN GALAFDMEYA RWLEEHNKHI NELRAAVNAH AGDNDLKSTV DSIMAHYNEI
FKLKGVAAKA DVFHVLSGMW KTPAERCFMW LGGFRSSELL KLLAGQLEPL TEQQLAGIAN
LQQSSQQAED ALSQGMEALQ QSLAETLASG SLGPAGSSGN VANYMGQMAM AMGKLGTLEN
FLRQADNLRL QTLQQMQRIL TTRQSARALL AISDYFSRLR ALSSLWLARP RE
