TGAL6_ORYSJ
ID TGAL6_ORYSJ Reviewed; 397 AA.
AC A0A0P0WFC8; A3AXU5; B7EMK6; C7J146; Q7XTU9;
DT 07-SEP-2016, integrated into UniProtKB/Swiss-Prot.
DT 20-JAN-2016, sequence version 1.
DT 25-MAY-2022, entry version 37.
DE RecName: Full=Transcription factor TGAL6 {ECO:0000305};
DE AltName: Full=bZIP transcription factor 37 {ECO:0000303|PubMed:18065552};
DE Short=OsbZIP37 {ECO:0000303|PubMed:18065552};
GN Name=TGAL6 {ECO:0000305};
GN OrderedLocusNames=Os04g0637000 {ECO:0000312|EMBL:BAS91227.1},
GN LOC_Os04g54474 {ECO:0000305};
GN ORFNames=OsJ_16330 {ECO:0000312|EMBL:EAZ32134.1},
GN OSJNBb0034I13.13 {ECO:0000312|EMBL:CAD41728.3};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=18065552; DOI=10.1104/pp.107.112821;
RA Nijhawan A., Jain M., Tyagi A.K., Khurana J.P.;
RT "Genomic survey and gene expression analysis of the basic leucine zipper
RT transcription factor family in rice.";
RL Plant Physiol. 146:333-350(2008).
CC -!- FUNCTION: Transcriptional regulator involved in defense response.
CC {ECO:0000250|UniProtKB:Q7X993}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00978}.
CC -!- SIMILARITY: Belongs to the bZIP family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAG93603.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=BAH92837.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAS91228.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=CAD41728.3; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=EAZ32134.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL606657; CAD41728.3; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008210; BAH92837.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014960; BAS91227.1; -; Genomic_DNA.
DR EMBL; AP014960; BAS91228.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CM000141; EAZ32134.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AK073715; BAG93603.1; ALT_INIT; mRNA.
DR RefSeq; XP_015636713.1; XM_015781227.1.
DR RefSeq; XP_015636714.1; XM_015781228.1.
DR RefSeq; XP_015636715.1; XM_015781229.1.
DR AlphaFoldDB; A0A0P0WFC8; -.
DR SMR; A0A0P0WFC8; -.
DR STRING; 4530.OS04T0637000-01; -.
DR PaxDb; A0A0P0WFC8; -.
DR EnsemblPlants; Os04t0637000-01; Os04t0637000-01; Os04g0637000.
DR GeneID; 9270267; -.
DR Gramene; Os04t0637000-01; Os04t0637000-01; Os04g0637000.
DR KEGG; osa:9270267; -.
DR eggNOG; ENOG502QS1H; Eukaryota.
DR OMA; AYANGNM; -.
DR OrthoDB; 752703at2759; -.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000007752; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006952; P:defense response; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR InterPro; IPR004827; bZIP.
DR InterPro; IPR046347; bZIP_sf.
DR InterPro; IPR025422; TGA_domain.
DR Pfam; PF00170; bZIP_1; 1.
DR Pfam; PF14144; DOG1; 1.
DR SMART; SM00338; BRLZ; 1.
DR SUPFAM; SSF57959; SSF57959; 1.
DR PROSITE; PS50217; BZIP; 1.
DR PROSITE; PS00036; BZIP_BASIC; 1.
DR PROSITE; PS51806; DOG1; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Nucleus; Plant defense; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..397
FT /note="Transcription factor TGAL6"
FT /id="PRO_0000437020"
FT DOMAIN 104..148
FT /note="bZIP"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT DOMAIN 175..390
FT /note="DOG1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01147"
FT REGION 106..126
FT /note="Basic motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
FT REGION 132..146
FT /note="Leucine-zipper"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00978"
SQ SEQUENCE 397 AA; 45092 MW; F6EF44E4493D83E0 CRC64;
MELYPGYLED HFNIHKLSIS SASPPEYMTS ASTQFAAPVR MGAYDRPPPV GMWSHEQFKV
DNGQATSAST IMEAEMKFEN RLEEIPQVVL EEGRNVDQEA SKPPDKVLRR LAQNREAARK
SRLRKKAYIQ QLETSRLKLA QLEQELQRAR QQAVYANGSL REPNLGFTGP IDPGALGFEI
KYSHWVDEQN RNTGELRNAL LQGQTTDQDL ELKLLVEAGL DNYNRLFEMK EEAANSDVFY
IMSGMWKTPT ERFFLWIGGF RPSEVLKNLR PQLEPLTDKQ VVEVGGLQQT SMQVEDALSQ
GMDKLKQTIA DSLTAADPFD SPEAYMVHMA NAVEQLRSLV QFVTQADHLR QQTLQEMHRI
LTTRQAARGL LALGDYFQRF RALSSLWAAR PRDSGIS
