THF1_ORYSJ
ID THF1_ORYSJ Reviewed; 287 AA.
AC Q84PB7; Q0D5I3;
DT 16-MAY-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 96.
DE RecName: Full=Protein THYLAKOID FORMATION1, chloroplastic;
DE Flags: Precursor;
GN Name=THF1; OrderedLocusNames=Os07g0558500, LOC_Os07g37250;
GN ORFNames=OsJ_24722 {ECO:0000312|EMBL:EAZ40280.1}, P0567H04.15-1;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RX PubMed=12684538; DOI=10.1073/pnas.0737574100;
RA Cooper B., Clarke J.D., Budworth P., Kreps J., Hutchison D., Park S.,
RA Guimil S., Dunn M., Luginbuehl P., Ellero C., Goff S.A., Glazebrook J.;
RT "A network of rice genes associated with stress response and seed
RT development.";
RL Proc. Natl. Acad. Sci. U.S.A. 100:4945-4950(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Involved in a dynamic process of vesicle-mediated thylakoid
CC membrane biogenesis. Required for the normal organization of vesicles
CC into mature thylakoid stacks and ultimately for leaf development (By
CC similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast outer membrane; Single-pass
CC membrane protein. Plastid, chloroplast stroma {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the THF1 family. {ECO:0000305}.
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DR EMBL; AY224446; AAO72565.1; -; mRNA.
DR EMBL; AP005195; BAC84034.1; -; Genomic_DNA.
DR EMBL; AP008213; BAF21890.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT02123.1; -; Genomic_DNA.
DR EMBL; CM000144; EAZ40280.1; -; Genomic_DNA.
DR EMBL; AK064914; BAG89278.1; -; mRNA.
DR RefSeq; XP_015646911.1; XM_015791425.1.
DR AlphaFoldDB; Q84PB7; -.
DR SMR; Q84PB7; -.
DR IntAct; Q84PB7; 4.
DR STRING; 4530.OS07T0558500-01; -.
DR PaxDb; Q84PB7; -.
DR PRIDE; Q84PB7; -.
DR EnsemblPlants; Os07t0558500-01; Os07t0558500-01; Os07g0558500.
DR GeneID; 4343584; -.
DR Gramene; Os07t0558500-01; Os07t0558500-01; Os07g0558500.
DR KEGG; osa:4343584; -.
DR eggNOG; ENOG502QUQV; Eukaryota.
DR HOGENOM; CLU_079763_0_1_1; -.
DR InParanoid; Q84PB7; -.
DR OMA; MVEMHLL; -.
DR OrthoDB; 1385923at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR ExpressionAtlas; Q84PB7; baseline and differential.
DR Genevisible; Q84PB7; OS.
DR GO; GO:0009707; C:chloroplast outer membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0010207; P:photosystem II assembly; IEA:InterPro.
DR GO; GO:0045037; P:protein import into chloroplast stroma; IBA:GO_Central.
DR GO; GO:0045038; P:protein import into chloroplast thylakoid membrane; IBA:GO_Central.
DR GO; GO:0010027; P:thylakoid membrane organization; IBA:GO_Central.
DR HAMAP; MF_01843; Thf1; 1.
DR InterPro; IPR017499; Thf1.
DR PANTHER; PTHR34793; PTHR34793; 1.
DR Pfam; PF11264; ThylakoidFormat; 1.
DR TIGRFAMs; TIGR03060; PS_II_psb29; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Coiled coil; Membrane; Plastid; Plastid outer membrane;
KW Reference proteome; Transit peptide; Transmembrane; Transmembrane helix.
FT TRANSIT 1..?
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN ?..287
FT /note="Protein THYLAKOID FORMATION1, chloroplastic"
FT /id="PRO_0000235208"
FT TOPO_DOM 1..190
FT /note="Chloroplast intermembrane"
FT /evidence="ECO:0000255"
FT TRANSMEM 191..213
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 214..287
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT REGION 256..287
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 237..267
FT /evidence="ECO:0000255"
FT COMPBIAS 256..272
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 273..287
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 287 AA; 32100 MW; 0B66CA8F06B22970 CRC64;
MAAISSLPFA ALRRAADCRP STAAAAAGAG AGAVVLSVRP RRGSRSVVRC VATAGDVPPT
VAETKMNFLK SYKRPILSIY STVLQELLVQ QHLMRYKTTY QYDAVFALGF VTVYDQLMEG
YPSNEDRDAI FKAYITALNE DPEQYRADAQ KMEEWARSQN GNSLVEFSSK DGEIEAILKD
ISERAQGKGS FSYSRFFAVG LFRLLELANA TEPTILDKLC AALNINKRSV DRDLDVYRNI
LSKLVQAKEL LKEYVEREKK KREERSETPK SNEAVTKFDG SLNSMRH
